Detailed information NTG0478552

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IAQ69_RS13770
• Genome accession: NZ_CP060811
• Coordinates: 2869149..2870009 (+)
• Length: 286 a.a.
• NCBI ID: WP_200229182.1
• Uniprot ID: -
• Organism: Acinetobacter variabilis strain XM9F202-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2864149..2875009

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAQ69_RS13750 (IAQ69_13745)	secG	2864767..2865096 (-)	330	WP_159122712.1	preprotein translocase subunit SecG	-
IAQ69_RS13755 (IAQ69_13750)	tpiA	2865110..2865901 (-)	792	WP_159122713.1	triose-phosphate isomerase	-
IAQ69_RS13760 (IAQ69_13755)	pilB	2866180..2867889 (+)	1710	WP_159122714.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IAQ69_RS13765 (IAQ69_13760)	pilC	2867920..2869149 (+)	1230	WP_180033708.1	type II secretion system F family protein	Machinery gene
IAQ69_RS13770 (IAQ69_13765)	pilD	2869149..2870009 (+)	861	WP_200229182.1	prepilin peptidase	Machinery gene
IAQ69_RS13775 (IAQ69_13770)	coaE	2870011..2870616 (+)	606	WP_200229184.1	dephospho-CoA kinase	-
IAQ69_RS13780 (IAQ69_13775)	-	2870655..2871572 (-)	918	WP_159122718.1	DMT family transporter	-
IAQ69_RS13785 (IAQ69_13780)	rlmB	2871616..2872365 (-)	750	WP_005233526.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IAQ69_RS13790 (IAQ69_13785)	-	2872508..2872831 (-)	324	WP_004787221.1	pyrimidine/purine nucleoside phosphorylase	-
IAQ69_RS13795 (IAQ69_13790)	recN	2873269..2874930 (+)	1662	WP_180031294.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32084.29 Da
• Isoelectric Point: 7.7903

>NTDB_id=478552 IAQ69_RS13770 WP_200229182.1 2869149..2870009(+) (pilD) [Acinetobacter variabilis strain XM9F202-2]
MQDFISYFSQNPTALYLAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP
IRWYQNIPVISWILLRGKCGNCQNPISIRYPFIELLTAACALIVVAVFGPTIQMLFGLVFTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGINSYAIYTTPDSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=478552 IAQ69_RS13770 WP_200229182.1 2869149..2870009(+) (pilD) [Acinetobacter variabilis strain XM9F202-2]
ATGCAAGATTTTATTTCATATTTCAGTCAAAACCCAACTGCGCTTTATCTCGCAGTTGGGCTTTTTAGTCTCTGTATTGG
TAGCTTTTTAAACGTTGTCATTTACCGTACCCCTAAAATGATGGAACAGGAATGGCGTACAGATTGCCAGCTGTTCTTGC
ATCCAGATCAGCCCATTATTGATGAAAGCAAAATTACTTTAAGCAAACCAGCTTCAACCTGCCCGAAATGTCAGACTCCT
ATTCGCTGGTATCAGAATATTCCGGTGATTAGCTGGATCTTATTACGTGGTAAATGTGGTAACTGTCAAAATCCTATCAG
TATCCGCTATCCATTTATTGAACTTCTCACAGCTGCTTGTGCGCTGATAGTGGTGGCAGTATTTGGGCCTACCATACAGA
TGCTGTTTGGTCTGGTTTTTACCTATGTCCTGATTGCCCTCACCTTTATTGATTTCGATACCCAGTTATTACCCGATCGC
TATACCCTGCCGCTGGCTGCACTCGGCCTGGGCATTAATAGTTATGCGATTTATACTACCCCTGATTCTGCCATCTGGGG
CTATATCATTGGCTTCTTATGCTTGTGGGTGGTGTACTATCTGTTTAAGCTGGTGACCGGCAAGGAAGGTATGGGCTATG
GAGATTTCAAATTACTAGCTGCCTTAGGTGCCTGGATGGGGCCTATGCTCCTACCACTCATTGTATTATTGTCATCATTG
GTGGGCGCGATTATTGGGATTATCCTGCTTAAAGTCCGTAAAGAAAATCAGCCCTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAAATTTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	81.404	99.65	0.811
pilD	Acinetobacter nosocomialis M2	81.053	99.65	0.808
pilD	Vibrio cholerae strain A1552	55.056	93.357	0.514
pilD	Vibrio campbellii strain DS40M4	52.688	97.552	0.514
pilD	Neisseria gonorrhoeae MS11	47.619	95.455	0.455