Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9Q64_RS07855 Genome accession   NZ_CP060804
Coordinates   1413566..1414024 (-) Length   152 a.a.
NCBI ID   WP_002382810.1    Uniprot ID   A0A7H0FT03
Organism   Enterococcus faecalis strain SF28073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1408566..1419024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q64_RS07835 (H9Q64_07835) - 1408770..1410929 (-) 2160 WP_002382814.1 ArdC-like ssDNA-binding domain-containing protein -
  H9Q64_RS07840 (H9Q64_07840) - 1410979..1412808 (-) 1830 WP_002382813.1 VirD4-like conjugal transfer protein, CD1115 family -
  H9Q64_RS07845 (H9Q64_07845) - 1412808..1413293 (-) 486 WP_002382812.1 PcfB family protein -
  H9Q64_RS07850 (H9Q64_07850) - 1413335..1413520 (-) 186 WP_002382811.1 hypothetical protein -
  H9Q64_RS07855 (H9Q64_07855) ssb 1413566..1414024 (-) 459 WP_002382810.1 single-stranded DNA-binding protein Machinery gene
  H9Q64_RS07860 (H9Q64_07860) - 1414029..1415126 (-) 1098 WP_002382809.1 hypothetical protein -
  H9Q64_RS07865 (H9Q64_07865) - 1415151..1415714 (-) 564 WP_002382807.1 hypothetical protein -
  H9Q64_RS07870 (H9Q64_07870) - 1415828..1416580 (-) 753 WP_002382806.1 Fic family protein -
  H9Q64_RS07875 (H9Q64_07875) - 1416694..1417302 (-) 609 WP_002382805.1 hypothetical protein -
  H9Q64_RS07880 (H9Q64_07880) - 1417286..1417531 (-) 246 WP_002382804.1 hypothetical protein -
  H9Q64_RS07885 (H9Q64_07885) - 1417518..1418123 (-) 606 WP_002382803.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17248.14 Da        Isoelectric Point: 4.7827

>NTDB_id=478474 H9Q64_RS07855 WP_002382810.1 1413566..1414024(-) (ssb) [Enterococcus faecalis strain SF28073]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAVNRNFTNQQGDREADFINCVIWRKAAESFANYARKGTLIGLTGRIQTR
NYDNQQGQRVYVTEIVVENFQLLESKEVNDQRRSSKPDQATFDKQATEKPDPLDPFSKDVSPIDISDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=478474 H9Q64_RS07855 WP_002382810.1 1413566..1414024(-) (ssb) [Enterococcus faecalis strain SF28073]
ATGATTAATAATGTGACATTAGTCGGTCGCTTAACAAAAGATCCTGACCTGCGTTACACACAAAGTGGAACAGCAGTTGG
ACAATTTACGTTAGCAGTTAATCGTAATTTCACGAATCAACAAGGAGATAGAGAAGCAGATTTTATTAATTGTGTTATTT
GGCGTAAAGCAGCTGAATCTTTCGCTAATTATGCGCGTAAAGGCACTTTAATTGGTTTAACAGGACGTATACAGACAAGA
AATTACGACAATCAACAAGGGCAACGCGTATATGTGACAGAAATTGTTGTAGAAAACTTTCAATTGTTGGAATCAAAAGA
AGTAAACGATCAACGTAGAAGTAGTAAGCCGGACCAAGCGACTTTTGACAAACAAGCAACTGAGAAACCTGACCCTCTTG
ATCCTTTTTCTAAAGATGTAAGTCCGATAGATATATCAGATGACGACCTTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H0FT03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.651
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

69.737

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

38.816

100

0.388
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.158

100

0.382
  ssbB/cilA Streptococcus pneumoniae Rx1

37.5

100

0.375
  ssbB/cilA Streptococcus pneumoniae D39

37.5

100

0.375
  ssbB/cilA Streptococcus pneumoniae R6

37.5

100

0.375
  ssbB/cilA Streptococcus mitis SK321

37.5

100

0.375
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.83

69.737

0.368