Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   H7A79_RS09880 Genome accession   NZ_CP060414
Coordinates   1871242..1872480 (-) Length   412 a.a.
NCBI ID   WP_135034422.1    Uniprot ID   -
Organism   Neisseria musculi strain NW831     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866242..1877480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS09850 (H7A79_1816) rfbC 1866690..1867226 (+) 537 WP_135034416.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  H7A79_RS09855 (H7A79_1817) rfbD 1867223..1868095 (+) 873 WP_187000127.1 dTDP-4-dehydrorhamnose reductase -
  H7A79_RS09860 - 1868684..1868881 (-) 198 WP_187000128.1 DNA gyrase inhibitor YacG -
  H7A79_RS09865 (H7A79_1818) zapD 1868891..1869649 (-) 759 WP_135034419.1 cell division protein ZapD -
  H7A79_RS09870 (H7A79_1819) coaE 1869646..1870266 (-) 621 WP_187000129.1 dephospho-CoA kinase -
  H7A79_RS09875 (H7A79_1820) pilD 1870377..1871240 (-) 864 WP_187000130.1 A24 family peptidase Machinery gene
  H7A79_RS09880 (H7A79_1821) pilG 1871242..1872480 (-) 1239 WP_135034422.1 type II secretion system F family protein Machinery gene
  H7A79_RS09885 (H7A79_1822) pilF 1872636..1874315 (-) 1680 WP_135034423.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7A79_RS09895 (H7A79_1824) - 1875012..1875632 (+) 621 WP_135034424.1 isochorismatase family protein -
  H7A79_RS09900 - 1875932..1876057 (-) 126 WP_255518792.1 hypothetical protein -
  H7A79_RS09905 (H7A79_1825) groES 1876211..1876498 (+) 288 WP_135034425.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45234.32 Da        Isoelectric Point: 10.1277

>NTDB_id=475840 H7A79_RS09880 WP_135034422.1 1871242..1872480(-) (pilG) [Neisseria musculi strain NW831]
MTKSSIGSRSAKKDKGVRFSFEGRNIDTEQMVRGEVVAKNEEEARKKLQRRGIKPLRVSKVKAVRKKRITQEDITVFTRQ
LATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQVRADVEQGSALGKAFSKHPKYFDRFYCNLIAAGEAGGVLESLLDKLA
VYKEKTQAIKKKVKSALTYPIAIVVVAVVLVFIMMVFVLPEFGKVYSSMGAELPGLTQIVMNISNLMVKYAWVIVVGAIV
AGFGLYQWYKRSPMLQKRVDAALLRLPIFGDIVRKATIARWARTTATLFTAGVPLVEVLDSVSGAAGNILYEEATQDIRA
KVTQGLSLTSSMQGTDMFPNMVLQMAAIGEESGSLDDMLNKAAEFYEDEVDNAVAQLSSLMEPVIMVVLGSIIGVILVAM
YLPLFNLGNVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=475840 H7A79_RS09880 WP_135034422.1 1871242..1872480(-) (pilG) [Neisseria musculi strain NW831]
ATGACCAAAAGCAGTATAGGCAGCCGCTCGGCCAAAAAAGACAAGGGCGTGCGTTTTTCTTTTGAGGGCAGAAATATAGA
CACCGAGCAAATGGTGCGTGGTGAGGTGGTGGCCAAAAACGAAGAAGAGGCGCGTAAAAAGCTCCAGCGGCGCGGTATTA
AACCGCTACGCGTAAGCAAGGTTAAAGCGGTGCGTAAAAAGCGGATCACTCAGGAAGACATTACCGTATTCACCCGTCAG
CTTGCTACTATGATGAAAGCCGGCCTGCCGTTGATGCAGGCATTTGAAATCGTGGCGCGCGGCCATTCCAACCCTTCTAT
GACGCAGATGTTGATGCAGGTGCGTGCAGATGTGGAGCAGGGTAGCGCATTGGGCAAGGCATTTTCTAAACATCCTAAAT
ATTTCGACCGTTTTTATTGCAATCTGATTGCCGCAGGTGAGGCGGGCGGCGTGCTTGAGTCGTTGTTGGACAAGTTGGCG
GTATATAAAGAAAAAACCCAAGCCATCAAAAAGAAAGTAAAAAGCGCGCTTACTTACCCGATTGCTATTGTGGTGGTAGC
TGTCGTGCTGGTGTTTATCATGATGGTGTTTGTGTTGCCGGAGTTCGGCAAGGTGTATAGCAGTATGGGTGCAGAACTAC
CCGGATTAACCCAAATCGTGATGAATATATCGAATTTGATGGTGAAGTATGCCTGGGTGATTGTGGTTGGTGCCATTGTT
GCCGGCTTCGGTCTGTATCAATGGTATAAAAGATCACCAATGTTGCAAAAACGGGTTGATGCGGCTTTACTCAGGCTGCC
GATCTTCGGCGATATTGTGCGCAAAGCCACGATTGCACGCTGGGCGCGCACCACAGCCACATTGTTTACTGCCGGCGTGC
CTTTAGTAGAGGTGCTGGACTCGGTGTCCGGGGCAGCCGGCAATATTCTTTATGAAGAGGCCACTCAAGATATTCGTGCC
AAAGTTACCCAAGGCTTGTCGCTGACCTCCAGTATGCAGGGCACCGATATGTTTCCCAATATGGTGTTACAGATGGCCGC
TATTGGAGAAGAATCCGGTTCGTTAGACGATATGTTGAACAAAGCCGCCGAATTCTATGAAGATGAAGTGGACAATGCCG
TTGCACAGCTCTCATCATTGATGGAGCCGGTTATCATGGTGGTGCTTGGGTCGATTATCGGCGTTATTCTCGTGGCTATG
TATCTGCCCCTGTTTAACTTGGGTAACGTGGTGGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

68.116

100

0.684
  pilG Neisseria gonorrhoeae MS11

68.37

99.757

0.682
  pilC Acinetobacter baylyi ADP1

46.766

97.573

0.456
  pilC Legionella pneumophila strain ERS1305867

46

97.087

0.447
  pilC Acinetobacter baumannii D1279779

45.363

96.845

0.439
  pilC Pseudomonas stutzeri DSM 10701

44.584

96.359

0.43
  pilC Vibrio cholerae strain A1552

38.945

96.602

0.376
  pilC Vibrio campbellii strain DS40M4

39.487

94.66

0.374