Detailed information NTG0475839

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7A79_RS09875
• Genome accession: NZ_CP060414
• Coordinates: 1870377..1871240 (-)
• Length: 287 a.a.
• NCBI ID: WP_187000130.1
• Uniprot ID: -
• Organism: Neisseria musculi strain NW831
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1865377..1876240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7A79_RS09845 (H7A79_1815)	rfbA	1865730..1866608 (+)	879	WP_135034415.1	glucose-1-phosphate thymidylyltransferase RfbA	-
H7A79_RS09850 (H7A79_1816)	rfbC	1866690..1867226 (+)	537	WP_135034416.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
H7A79_RS09855 (H7A79_1817)	rfbD	1867223..1868095 (+)	873	WP_187000127.1	dTDP-4-dehydrorhamnose reductase	-
H7A79_RS09860	-	1868684..1868881 (-)	198	WP_187000128.1	DNA gyrase inhibitor YacG	-
H7A79_RS09865 (H7A79_1818)	zapD	1868891..1869649 (-)	759	WP_135034419.1	cell division protein ZapD	-
H7A79_RS09870 (H7A79_1819)	coaE	1869646..1870266 (-)	621	WP_187000129.1	dephospho-CoA kinase	-
H7A79_RS09875 (H7A79_1820)	pilD	1870377..1871240 (-)	864	WP_187000130.1	A24 family peptidase	Machinery gene
H7A79_RS09880 (H7A79_1821)	pilG	1871242..1872480 (-)	1239	WP_135034422.1	type II secretion system F family protein	Machinery gene
H7A79_RS09885 (H7A79_1822)	pilF	1872636..1874315 (-)	1680	WP_135034423.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H7A79_RS09895 (H7A79_1824)	-	1875012..1875632 (+)	621	WP_135034424.1	isochorismatase family protein	-
H7A79_RS09900	-	1875932..1876057 (-)	126	WP_255518792.1	hypothetical protein	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 30731.05 Da
• Isoelectric Point: 8.9727

>NTDB_id=475839 H7A79_RS09875 WP_187000130.1 1870377..1871240(-) (pilD) [Neisseria musculi strain NW831]
MLAFLHGLAPFAVPLAALTGLLTGSFLNVVIYRVPVMMERGWTVFAKEHLGLELTAAEQQPFNLIKPDSRCPKCYTPVKP
WQNIPVVSYLLLGGKCGSCKAPISKRYPLVELLTGILFAAVTCQYGWSMVTLGGLILTALLIALAFIDADTQYLPDQLTL
PLIWLGLLFNLDGTFVPLASAVLGAVCGYMSLWMLCYIYKLLTGKIGMGGGDLKLLAALGAWLGAGVLPVLVFIAALIGI
VAALVMRVAKGRPFAFGPSLAVAGWLVFIANDKISAAVRWWLGVSGF

Nucleotide

• Length: 864 bp

>NTDB_id=475839 H7A79_RS09875 WP_187000130.1 1870377..1871240(-) (pilD) [Neisseria musculi strain NW831]
ATGTTGGCATTTCTTCACGGGCTGGCACCCTTTGCGGTGCCTTTGGCTGCTTTGACCGGCTTATTGACAGGCAGTTTTTT
AAACGTAGTGATTTACCGTGTGCCGGTGATGATGGAGCGCGGATGGACGGTATTTGCCAAAGAACACCTGGGTTTGGAAC
TGACGGCGGCAGAGCAGCAGCCCTTTAATTTGATTAAACCGGACTCCCGTTGTCCGAAATGTTATACACCGGTTAAGCCG
TGGCAGAATATTCCGGTGGTCAGTTACTTACTGTTGGGCGGTAAATGCGGGAGCTGCAAAGCCCCGATCAGCAAGCGTTA
TCCTTTGGTAGAGTTGCTGACCGGTATATTGTTTGCTGCTGTAACGTGCCAATACGGGTGGAGCATGGTTACTTTGGGCG
GTTTGATCTTGACCGCCCTGTTGATTGCGTTAGCCTTTATCGATGCCGACACACAATATCTGCCCGACCAATTAACTCTG
CCGCTGATATGGCTAGGTTTGCTGTTCAACTTGGACGGCACGTTCGTACCGCTTGCTTCAGCCGTACTCGGCGCAGTCTG
CGGATATATGAGCCTGTGGATGTTGTGTTATATTTACAAACTGCTAACCGGTAAAATCGGCATGGGCGGTGGTGATCTCA
AGCTGCTGGCAGCGCTGGGCGCATGGTTGGGAGCAGGCGTATTGCCGGTATTGGTATTTATAGCCGCCCTGATCGGGATA
GTTGCCGCGTTGGTGATGCGGGTGGCGAAAGGCCGGCCGTTTGCGTTCGGCCCCAGTTTGGCTGTAGCAGGGTGGTTGGT
TTTTATTGCAAACGACAAAATCAGTGCCGCAGTGAGATGGTGGCTGGGTGTTTCCGGGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	72.954	97.909	0.714
pilD	Acinetobacter baumannii D1279779	47.308	90.592	0.429
pilD	Vibrio cholerae strain A1552	46.038	92.334	0.425
pilD	Acinetobacter nosocomialis M2	46.923	90.592	0.425
pilD	Vibrio campbellii strain DS40M4	44.944	93.031	0.418