Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H7F35_RS05090 Genome accession   NZ_CP060295
Coordinates   1071947..1073176 (+) Length   409 a.a.
NCBI ID   WP_187111868.1    Uniprot ID   A0A7G8VLV2
Organism   Variovorax sp. PAMC26660     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1066947..1078176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F35_RS05060 (H7F35_05060) cgtA 1067043..1068119 (-) 1077 WP_187111865.1 Obg family GTPase CgtA -
  H7F35_RS05065 (H7F35_05065) rpmA 1068191..1068451 (-) 261 WP_013543198.1 50S ribosomal protein L27 -
  H7F35_RS05070 (H7F35_05070) rplU 1068464..1068775 (-) 312 WP_187111866.1 50S ribosomal protein L21 -
  H7F35_RS05075 (H7F35_05075) - 1068957..1069949 (+) 993 WP_187114149.1 polyprenyl synthetase family protein -
  H7F35_RS05085 (H7F35_05085) pilB 1070189..1071922 (+) 1734 WP_187111867.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7F35_RS05090 (H7F35_05090) pilC 1071947..1073176 (+) 1230 WP_187111868.1 type II secretion system F family protein Machinery gene
  H7F35_RS05095 (H7F35_05095) - 1073176..1074141 (+) 966 WP_187111869.1 prepilin peptidase -
  H7F35_RS05100 (H7F35_05100) coaE 1074150..1074758 (+) 609 WP_187111870.1 dephospho-CoA kinase -
  H7F35_RS05105 (H7F35_05105) - 1074832..1076325 (+) 1494 WP_187111871.1 MBOAT family O-acyltransferase -
  H7F35_RS05110 (H7F35_05110) - 1076327..1077349 (+) 1023 WP_261803530.1 hypothetical protein -
  H7F35_RS05115 (H7F35_05115) zapD 1077381..1078136 (+) 756 WP_187111872.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44729.37 Da        Isoelectric Point: 9.5499

>NTDB_id=475516 H7F35_RS05090 WP_187111868.1 1071947..1073176(+) (pilC) [Variovorax sp. PAMC26660]
MATVAPSRSQVTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPISVVVVAFIVIAIIMIFVIPAFKEVFTSFGADLPAPTLIVIGISEFFVSYWWLIFGGLGGGI
YFFLQAWRRNERVQRVMDRALLRIPIFGTLIEKSCIARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATSKIQQEV
STGTSLTTAMTNANLFPSMVIQMTSIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=475516 H7F35_RS05090 WP_187111868.1 1071947..1073176(+) (pilC) [Variovorax sp. PAMC26660]
ATGGCAACAGTGGCACCCTCCCGCTCCCAAGTCACCCACAAGGAATTTGTCTTCGAATGGGAAGGCAAGGACCGCAATGG
CAAGCTGGTGCGTGGCGAACTCCGGGCAGCCGGCGAAAACCAGGTGCAGGCCGCACTGCGTCGCCAGGGCGTGCTCGCCT
CCAAGATCAAGAAACGCCGGATGCGATCGGGCAAGGCGATCAAGCCCAAGGACATTGCGATCTTCACGCGCCAGCTGGCA
ACCATGATGAAGGCTGGCGTGCCCTTGATGCAGTCCTTTGACATCGTCGGGCGCGGCAACGCCAATGCCAGCGTGGCCAA
GCTCCTGAATGACATCCGCAGCGATGTGGAAACCGGTACATCGCTGTCGGCGGCCTTTCGCAAGTTTCCGAAGTATTTCG
ATAACCTTTACTGCAATCTGGTGGAGGCTGGTGAAGCGGCCGGCATTCTCGAAGAACTGCTCGACCGCCTGGCTACCTAC
ATGGAGAAGACCGAGGCGATCAAATCCAAGATCAAGTCGGCACTGATGTACCCGATTTCGGTGGTCGTGGTGGCCTTCAT
CGTGATCGCCATCATCATGATCTTTGTCATCCCGGCATTCAAGGAGGTGTTCACCTCATTCGGCGCAGACCTGCCTGCGC
CCACGTTGATCGTGATCGGCATCAGCGAGTTTTTTGTGTCGTACTGGTGGCTGATCTTTGGTGGCCTCGGCGGGGGCATC
TACTTTTTCCTCCAGGCCTGGAGGCGCAATGAGCGGGTGCAGCGAGTCATGGATCGAGCATTGCTGCGCATCCCCATCTT
CGGTACCCTGATCGAGAAGTCCTGCATCGCCCGCTGGACCCGAACCCTCGCAACCATGTTTGCAGCGGGTGTACCGCTGG
TCGAAGCCCTCGACTCGGTGGGCGGCGCCTCAGGCAATACCGTCTACGGCGACGCCACTTCCAAGATCCAGCAGGAAGTG
TCGACTGGTACCAGCCTCACCACGGCCATGACCAATGCGAACCTGTTCCCGTCCATGGTGATTCAGATGACTTCCATCGG
CGAAGAATCCGGCTCCATCGACCACATGCTTGGCAAGGCGGCCGACTTCTACGAGTCCGAGGTCGACGACATGGTGGCGG
GCCTGTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTCGGCACGATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8VLV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.465

98.778

0.528
  pilG Neisseria gonorrhoeae MS11

53.149

97.066

0.516
  pilG Neisseria meningitidis 44/76-A

52.897

97.066

0.513
  pilC Acinetobacter baylyi ADP1

49.878

100

0.501
  pilC Legionella pneumophila strain ERS1305867

50.253

96.822

0.487
  pilC Acinetobacter baumannii D1279779

48.615

97.066

0.472
  pilC Vibrio cholerae strain A1552

41.96

97.311

0.408
  pilC Vibrio campbellii strain DS40M4

39.048

100

0.401
  pilC Thermus thermophilus HB27

36.993

100

0.379