Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   DMSX03_RS06480 Genome accession   NZ_CP060271
Coordinates   1376081..1376398 (+) Length   105 a.a.
NCBI ID   WP_029377192.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371081..1381398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS06450 - 1371436..1371633 (+) 198 WP_029377186.1 YqgQ family protein -
  DMSX03_RS06455 - 1372015..1373001 (+) 987 WP_029377187.1 glucokinase -
  DMSX03_RS06460 - 1373001..1373324 (+) 324 WP_029377188.1 MTH1187 family thiamine-binding protein -
  DMSX03_RS06465 - 1373326..1373949 (+) 624 WP_029377189.1 MBL fold metallo-hydrolase -
  DMSX03_RS06470 comGA 1374048..1375022 (+) 975 WP_029377190.1 competence type IV pilus ATPase ComGA Machinery gene
  DMSX03_RS06475 comGB 1374994..1376061 (+) 1068 WP_051664335.1 competence type IV pilus assembly protein ComGB -
  DMSX03_RS06480 comGC 1376081..1376398 (+) 318 WP_029377192.1 competence type IV pilus major pilin ComGC Machinery gene
  DMSX03_RS06485 comGD 1376373..1376822 (+) 450 WP_257470552.1 competence type IV pilus minor pilin ComGD -
  DMSX03_RS06490 - 1376809..1377108 (+) 300 WP_029377194.1 hypothetical protein -
  DMSX03_RS06495 comGF 1377092..1377523 (+) 432 WP_231291662.1 competence type IV pilus minor pilin ComGF -
  DMSX03_RS06500 - 1377703..1378203 (+) 501 WP_037557022.1 shikimate kinase -
  DMSX03_RS06505 gcvT 1378390..1379481 (+) 1092 WP_029377198.1 glycine cleavage system aminomethyltransferase GcvT -
  DMSX03_RS06510 gcvPA 1379499..1380851 (+) 1353 WP_029377199.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11788.86 Da        Isoelectric Point: 8.4952

>NTDB_id=475106 DMSX03_RS06480 WP_029377192.1 1376081..1376398(+) (comGC) [Staphylococcus xylosus strain DMSX03]
MNNFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMDELVNEG
YIKENQKQCKSGALISINDGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=475106 DMSX03_RS06480 WP_029377192.1 1376081..1376398(+) (comGC) [Staphylococcus xylosus strain DMSX03]
ATGAATAATTTTAAAAATAAGTTTAACAAAAAGGCATTTACACTCATTGAAATGCTATTGGTTTTATTAATAATAAGTTT
GTTATTAATACTAATAATACCTAATATAGCTAAACAATCCTCACACATACAAACAACTAGTTGTGAAGCGCAACTCAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGTTTGAAGTTCAATAAGAAGCCAACTACTATGGACGAACTCGTCAACGAAGGT
TATATCAAAGAGAACCAAAAACAATGTAAGTCAGGCGCCTTAATATCGATAAATGATGGTGAAGCAGTTGCAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

70.297

96.19

0.676
  comGC Staphylococcus aureus MW2

70.297

96.19

0.676
  comYC Streptococcus gordonii str. Challis substr. CH1

46.296

100

0.476
  comGC/cglC Streptococcus pneumoniae D39

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae R6

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae TIGR4

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae Rx1

39.623

100

0.4
  comGC/cglC Streptococcus mitis NCTC 12261

40

100

0.4
  comGC/cglC Streptococcus mitis SK321

41.667

91.429

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

49.351

73.333

0.362
  comYC Streptococcus mutans UA159

49.351

73.333

0.362