Detailed information NTG0474628

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: I6A80_RS05505
• Genome accession: NZ_CP060241
• Coordinates: 1203369..1204586 (-)
• Length: 405 a.a.
• NCBI ID: WP_023103506.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain C-I-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1198369..1209586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6A80_RS05460 (I6A80_001113)	-	1198551..1199000 (-)	450	WP_003161439.1	MOSC domain-containing protein	-
I6A80_RS05465 (I6A80_001114)	-	1198997..1199626 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
I6A80_RS05470 (I6A80_001115)	-	1199759..1200184 (+)	426	WP_016562341.1	GNAT family N-acetyltransferase	-
I6A80_RS05475 (I6A80_001116)	-	1200181..1200651 (+)	471	WP_023103507.1	hypothetical protein	-
I6A80_RS05480 (I6A80_001117)	-	1200648..1201337 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
I6A80_RS05485 (I6A80_001118)	-	1201443..1201652 (+)	210	WP_003094660.1	hypothetical protein	-
I6A80_RS05490 (I6A80_001119)	yacG	1201689..1201889 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
I6A80_RS05495 (I6A80_001120)	coaE	1201886..1202497 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
I6A80_RS05500 (I6A80_001121)	pilD	1202494..1203366 (-)	873	WP_017148550.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
I6A80_RS05505 (I6A80_001122)	pilC	1203369..1204586 (-)	1218	WP_023103506.1	type II secretion system F family protein	Machinery gene
I6A80_RS05510 (I6A80_001123)	pilB	1204590..1206293 (-)	1704	WP_023100230.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6A80_RS05515 (I6A80_001124)	pilE	1206520..1207056 (+)	537	WP_025921208.1	pilin	Machinery gene
I6A80_RS05520 (I6A80_001125)	tfpZ	1207121..1207858 (+)	738	WP_023110409.1	TfpX/TfpZ family type IV pilin accessory protein	-
I6A80_RS05530 (I6A80_001127)	nadC	1208092..1208940 (-)	849	WP_033955591.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 43875.86 Da
• Isoelectric Point: 9.9457

>NTDB_id=474628 I6A80_RS05505 WP_023103506.1 1203369..1204586(-) (pilC) [Pseudomonas aeruginosa strain C-I-1]
MADKALKTSVFIWEGTDKKGSKVKGELTGQNPMLVKAQLRKQGINPLKVRKKGITLFGAGKKIKPMDIALFTRQMATMMG
AGVPLLQSFDIIGEGFENPNMRKLVDEIKQEVAAGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALETLLARVATYKEKT
EALKAKIKKAMTYPIAVVIVALVVSAILLIKVVPQFQSVFANFGAELPAFTQMVIGLSETLQEWWLLVLIAMLGIGFALK
ELYKRSKSFRDTIDRAILKAPIVGAIVYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKSAVAKIKQDVSSGM
QLNFSMRTTNVFPSMAIQMAAIGEESGSLDDMLGKVAGFYEDEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGKVI

Nucleotide

• Length: 1218 bp

>NTDB_id=474628 I6A80_RS05505 WP_023103506.1 1203369..1204586(-) (pilC) [Pseudomonas aeruginosa strain C-I-1]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCATCTGGGAAGGTACTGATAAGAAGGGCAGCAAGGTCAAAGGAGAGTT
GACCGGGCAAAACCCTATGCTGGTCAAAGCCCAGCTACGCAAACAGGGTATCAATCCGCTGAAAGTCCGCAAGAAAGGCA
TCACGCTATTCGGTGCGGGAAAAAAAATCAAACCCATGGACATCGCACTGTTCACTCGGCAGATGGCGACCATGATGGGC
GCAGGCGTGCCCCTATTGCAGTCCTTCGACATCATTGGCGAGGGCTTCGAAAATCCGAACATGCGAAAGCTGGTTGACGA
AATAAAGCAGGAAGTCGCAGCCGGTAATAGCTTGGCCAACTCACTACGAAAGAAGCCCCAGTATTTTGACGACCTTTACT
GCAATCTTGTAGATGCGGGCGAACAATCAGGCGCATTGGAAACGCTTCTCGCCCGGGTTGCTACCTACAAGGAAAAAACT
GAGGCACTCAAAGCCAAGATCAAGAAAGCTATGACCTACCCCATCGCGGTCGTTATCGTGGCACTGGTGGTCTCTGCGAT
CCTACTCATTAAGGTTGTTCCGCAATTCCAGTCAGTTTTCGCGAACTTTGGTGCAGAGCTACCAGCCTTCACTCAAATGG
TGATCGGACTTTCGGAAACATTACAAGAATGGTGGCTACTTGTCCTCATCGCCATGCTCGGCATAGGTTTTGCTCTGAAA
GAGTTGTACAAGCGCTCCAAAAGTTTCCGCGACACCATAGACAGAGCCATACTGAAAGCTCCCATCGTCGGTGCCATCGT
CTATAAGTCAGCCGTAGCACGTTATGCACGGACCCTATCGACTACGTTTGCAGCAGGCGTTCCTCTAGTCGAGGCTTTGG
ATTCGGTATCAGGGGCCACAGGTAATGTGGTGTTTAAAAGCGCAGTCGCCAAGATCAAGCAGGACGTTTCCAGCGGTATG
CAGTTGAACTTCTCCATGCGCACCACCAATGTTTTTCCGAGTATGGCTATCCAGATGGCTGCGATTGGCGAAGAATCTGG
TTCGCTGGACGACATGCTTGGCAAAGTGGCTGGCTTCTACGAGGATGAAGTAGATAATGCCGTCGACAATTTGACGACTT
TGATGGAACCAATGATCATGGCGGTGCTGGGAGTCCTGGTTGGCGGATTGATCGTCGCTATGTATCTGCCTATTTTCCAG
CTCGGCAAAGTTATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	79.506	100	0.795
pilC	Acinetobacter baylyi ADP1	58.968	100	0.593
pilC	Acinetobacter baumannii D1279779	59.158	99.753	0.59
pilC	Legionella pneumophila strain ERS1305867	53.535	97.778	0.523
pilG	Neisseria meningitidis 44/76-A	45.926	100	0.459
pilG	Neisseria gonorrhoeae MS11	45.679	100	0.457
pilC	Vibrio cholerae strain A1552	42.963	100	0.43
pilC	Vibrio campbellii strain DS40M4	41.414	97.778	0.405
pilC	Thermus thermophilus HB27	37.406	99.012	0.37