Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6A80_RS05500 Genome accession   NZ_CP060241
Coordinates   1202494..1203366 (-) Length   290 a.a.
NCBI ID   WP_017148550.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C-I-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197494..1208366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6A80_RS05455 (I6A80_001112) - 1198355..1198525 (-) 171 WP_003094672.1 DUF3094 family protein -
  I6A80_RS05460 (I6A80_001113) - 1198551..1199000 (-) 450 WP_003161439.1 MOSC domain-containing protein -
  I6A80_RS05465 (I6A80_001114) - 1198997..1199626 (-) 630 WP_003094668.1 DUF1780 domain-containing protein -
  I6A80_RS05470 (I6A80_001115) - 1199759..1200184 (+) 426 WP_016562341.1 GNAT family N-acetyltransferase -
  I6A80_RS05475 (I6A80_001116) - 1200181..1200651 (+) 471 WP_023103507.1 hypothetical protein -
  I6A80_RS05480 (I6A80_001117) - 1200648..1201337 (+) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  I6A80_RS05485 (I6A80_001118) - 1201443..1201652 (+) 210 WP_003094660.1 hypothetical protein -
  I6A80_RS05490 (I6A80_001119) yacG 1201689..1201889 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  I6A80_RS05495 (I6A80_001120) coaE 1201886..1202497 (-) 612 WP_003112838.1 dephospho-CoA kinase -
  I6A80_RS05500 (I6A80_001121) pilD 1202494..1203366 (-) 873 WP_017148550.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  I6A80_RS05505 (I6A80_001122) pilC 1203369..1204586 (-) 1218 WP_023103506.1 type II secretion system F family protein Machinery gene
  I6A80_RS05510 (I6A80_001123) pilB 1204590..1206293 (-) 1704 WP_023100230.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6A80_RS05515 (I6A80_001124) pilE 1206520..1207056 (+) 537 WP_025921208.1 pilin Machinery gene
  I6A80_RS05520 (I6A80_001125) tfpZ 1207121..1207858 (+) 738 WP_023110409.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31888.88 Da        Isoelectric Point: 7.7068

>NTDB_id=474627 I6A80_RS05500 WP_017148550.1 1202494..1203366(-) (pilD) [Pseudomonas aeruginosa strain C-I-1]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=474627 I6A80_RS05500 WP_017148550.1 1202494..1203366(-) (pilD) [Pseudomonas aeruginosa strain C-I-1]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.357

96.552

0.534
  pilD Vibrio campbellii strain DS40M4

53.791

95.517

0.514
  pilD Acinetobacter nosocomialis M2

51.071

96.552

0.493
  pilD Acinetobacter baumannii D1279779

51.071

96.552

0.493
  pilD Neisseria gonorrhoeae MS11

48.571

96.552

0.469