Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H4W19_RS09340 Genome accession   NZ_CP060028
Coordinates   1963521..1964675 (+) Length   384 a.a.
NCBI ID   WP_313770793.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain GTZY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1958824..1968352 1963521..1964675 within 0


Gene organization within MGE regions


Location: 1958824..1968352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4W19_RS09320 (H4W19_09320) - 1958824..1959798 (+) 975 WP_185896924.1 glycosyltransferase family 2 protein -
  H4W19_RS09325 (H4W19_09325) - 1959795..1960403 (+) 609 WP_185896925.1 class I SAM-dependent methyltransferase -
  H4W19_RS09330 (H4W19_09330) - 1960508..1961302 (+) 795 WP_345776409.1 hypothetical protein -
  H4W19_RS09335 (H4W19_09335) pilB 1961453..1963195 (+) 1743 WP_185896927.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H4W19_RS09340 (H4W19_09340) pilC 1963521..1964675 (+) 1155 WP_313770793.1 type II secretion system F family protein Machinery gene
  H4W19_RS09345 (H4W19_09345) pilD 1964685..1965548 (+) 864 WP_185896929.1 A24 family peptidase Machinery gene
  H4W19_RS09350 (H4W19_09350) coaE 1965582..1966199 (+) 618 WP_185896930.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42014.69 Da        Isoelectric Point: 10.0510

>NTDB_id=473418 H4W19_RS09340 WP_313770793.1 1963521..1964675(+) (pilC) [Pseudoxanthomonas mexicana strain GTZY]
MKGEQSSKNANFLRAELRKQGITPTVVKVKPKPLFGAAGKPVSPKEIAFFSRQLATMMKSGVPIVGALEIIEGGQKNVRM
KKMVESIRYDIESGSSLSEAIGKHPVQFDELYRNLVRAGESAGVLETVLDTIASYKENLEALKGKIKKALFYPAVVIAVA
LLVSAILLIFVVPQFEAVFKQFGADLPAFTKIIVGASRFMVSNWYIVFGAAFAAIFSFIFFKKRSLAFQHFLDRVILKVP
VIGQIMHNSAIARFARTLAVTFKAGVPLVEALDTVAGSTGNTVYEKAVHRVRDDVSVGYPLNMSMKQVNLFPHMVIQMTA
IGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPFIMIFIGGIIGAMVIGMYLPIFKLAATM

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=473418 H4W19_RS09340 WP_313770793.1 1963521..1964675(+) (pilC) [Pseudoxanthomonas mexicana strain GTZY]
ATGAAGGGCGAGCAGTCGTCCAAGAACGCCAACTTCCTGCGCGCGGAGCTGCGCAAGCAGGGCATCACCCCGACCGTGGT
GAAGGTGAAGCCCAAGCCGTTGTTCGGCGCAGCGGGCAAGCCGGTCAGCCCGAAGGAAATCGCCTTCTTCAGCCGCCAGC
TGGCCACGATGATGAAGTCCGGCGTGCCGATCGTGGGCGCGCTGGAGATCATCGAGGGCGGGCAGAAGAACGTCCGGATG
AAGAAGATGGTCGAGAGCATCCGCTACGACATCGAAAGCGGTTCCTCGCTGTCCGAGGCCATCGGCAAGCACCCGGTGCA
GTTCGACGAGTTGTATCGCAACCTGGTCCGTGCCGGCGAAAGCGCGGGTGTGCTGGAGACGGTGCTCGACACCATCGCCA
GCTACAAGGAAAACCTGGAAGCGCTGAAAGGCAAGATCAAGAAAGCGCTGTTCTACCCCGCCGTGGTGATCGCGGTGGCC
CTGCTGGTCAGCGCCATCCTGCTGATCTTCGTCGTACCGCAGTTCGAGGCGGTGTTCAAGCAGTTCGGCGCCGACCTGCC
GGCCTTCACCAAGATCATCGTGGGTGCCTCGCGCTTCATGGTGTCCAACTGGTACATCGTGTTCGGCGCCGCCTTCGCGG
CGATCTTCAGCTTCATTTTCTTCAAGAAGCGCTCGCTGGCCTTCCAGCATTTCCTCGACCGCGTGATCCTGAAGGTCCCC
GTGATCGGCCAGATCATGCACAATTCGGCCATCGCCCGGTTCGCGCGGACCCTGGCGGTGACCTTCAAGGCCGGCGTGCC
GCTGGTGGAGGCGCTGGACACCGTCGCCGGCTCCACCGGCAACACGGTGTACGAAAAGGCCGTGCATCGCGTCCGCGATG
ACGTGTCGGTGGGCTACCCGCTGAACATGTCCATGAAGCAGGTCAACCTGTTCCCGCACATGGTCATCCAGATGACGGCC
ATCGGCGAAGAGGCCGGCGCGCTGGACGCCATGCTGTTCAAGGTGGCGGAGTACTACGAGCAGGAGGTGAACAACGCGGT
GGATGCGTTGTCCAGCCTGATCGAGCCCTTCATCATGATCTTCATCGGCGGCATCATCGGTGCCATGGTGATCGGCATGT
ACCTGCCCATCTTCAAGCTTGCGGCGACGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(254-376)

Type II secretion system (T2SS), protein F (T2SSF)

(50-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.188

99.479

0.539
  pilC Pseudomonas stutzeri DSM 10701

50.785

99.479

0.505
  pilC Acinetobacter baylyi ADP1

49.608

99.74

0.495
  pilC Acinetobacter baumannii D1279779

49.347

99.74

0.492
  pilG Neisseria gonorrhoeae MS11

43.045

99.219

0.427
  pilG Neisseria meningitidis 44/76-A

43.045

99.219

0.427
  pilC Vibrio cholerae strain A1552

40.323

96.875

0.391
  pilC Vibrio campbellii strain DS40M4

41.86

89.583

0.375
  pilC Thermus thermophilus HB27

41.056

88.802

0.365