Detailed information NTG0473419

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H4W19_RS09345
• Genome accession: NZ_CP060028
• Coordinates: 1964685..1965548 (+)
• Length: 287 a.a.
• NCBI ID: WP_185896929.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas mexicana strain GTZY
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1958824..1968352	1964685..1965548	within	0

Gene organization within MGE regions

Location: 1958824..1968352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4W19_RS09320 (H4W19_09320)	-	1958824..1959798 (+)	975	WP_185896924.1	glycosyltransferase family 2 protein	-
H4W19_RS09325 (H4W19_09325)	-	1959795..1960403 (+)	609	WP_185896925.1	class I SAM-dependent methyltransferase	-
H4W19_RS09330 (H4W19_09330)	-	1960508..1961302 (+)	795	WP_345776409.1	hypothetical protein	-
H4W19_RS09335 (H4W19_09335)	pilB	1961453..1963195 (+)	1743	WP_185896927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H4W19_RS09340 (H4W19_09340)	pilC	1963521..1964675 (+)	1155	WP_313770793.1	type II secretion system F family protein	Machinery gene
H4W19_RS09345 (H4W19_09345)	pilD	1964685..1965548 (+)	864	WP_185896929.1	A24 family peptidase	Machinery gene
H4W19_RS09350 (H4W19_09350)	coaE	1965582..1966199 (+)	618	WP_185896930.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31905.83 Da
• Isoelectric Point: 8.5960

>NTDB_id=473419 H4W19_RS09345 WP_185896929.1 1964685..1965548(+) (pilD) [Pseudoxanthomonas mexicana strain GTZY]
MAFLDQHPELGYPVVAGLGLLVGSFLNVVILRLPRRLEWEWKRDAREVLEEPEIYDPPPPGIVVERSHCPHCKTPLSWYE
NIPLFSWLVLRGKCRHCKAPISPQYPLVELLTALLAMASVWRFGFGWQGFGAALFSCYLVALSGIDLRTRLLPDQLTLPL
MWLGLIGSLDNLYMPAKPALLGVIAGYVSLWLVWWLFKQVTGKEGMGRGDFKLLAAIGAWVGLNGVLPTLLLSSVVGAVI
GSVWLATQGRDRATPIPFGPYLAIAGWIVFFWGPQIIDAYLRFAGLK

Nucleotide

• Length: 864 bp

>NTDB_id=473419 H4W19_RS09345 WP_185896929.1 1964685..1965548(+) (pilD) [Pseudoxanthomonas mexicana strain GTZY]
ATGGCATTCCTGGATCAACACCCCGAACTGGGGTACCCGGTGGTGGCAGGCCTGGGCCTGCTGGTGGGCAGCTTCCTCAA
CGTGGTCATCCTGCGGCTGCCGCGGCGGCTGGAGTGGGAATGGAAGCGCGACGCGCGCGAGGTGCTGGAGGAGCCGGAGA
TCTACGATCCCCCGCCGCCCGGCATCGTGGTGGAGCGCTCGCACTGCCCCCACTGCAAGACGCCGCTGTCGTGGTACGAG
AACATTCCACTGTTCAGCTGGCTGGTGCTGCGCGGCAAGTGCCGCCACTGCAAGGCCCCCATCTCGCCGCAGTATCCGCT
GGTCGAACTGCTGACCGCGCTGCTGGCGATGGCCTCGGTGTGGCGCTTCGGCTTCGGCTGGCAGGGGTTCGGGGCGGCCC
TCTTCAGTTGCTACCTGGTGGCGCTAAGCGGCATCGACCTGCGCACGCGCCTGCTGCCCGACCAGCTGACGCTGCCGTTG
ATGTGGCTGGGCCTGATCGGCAGCCTGGACAACCTGTACATGCCGGCCAAACCGGCGCTGCTGGGCGTGATCGCCGGCTA
CGTCTCGCTGTGGCTGGTGTGGTGGCTGTTCAAGCAGGTCACCGGCAAGGAAGGCATGGGGCGGGGCGACTTCAAGCTGC
TGGCGGCCATCGGCGCCTGGGTGGGGCTCAACGGCGTACTGCCGACGCTGCTGCTGTCCTCGGTGGTCGGTGCGGTGATC
GGTTCGGTATGGCTGGCCACGCAGGGCCGCGACCGCGCCACGCCGATTCCATTCGGCCCCTATCTGGCCATCGCCGGGTG
GATCGTGTTCTTCTGGGGCCCGCAGATCATCGACGCCTACCTGCGTTTCGCCGGGCTGAAATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (135-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.273	95.819	0.491
pilD	Vibrio campbellii strain DS40M4	47.535	98.955	0.47
pilD	Acinetobacter nosocomialis M2	47.163	98.258	0.463
pilD	Acinetobacter baumannii D1279779	46.454	98.258	0.456
pilD	Neisseria gonorrhoeae MS11	44.28	94.425	0.418