Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HNQ25_RS20335 Genome accession   NZ_CP060009
Coordinates   4325102..4326322 (+) Length   406 a.a.
NCBI ID   WP_185806061.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain B10D7D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4320102..4331322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNQ25_RS20320 (HNQ25_20320) - 4321076..4322521 (-) 1446 WP_244968160.1 O-antigen ligase family protein -
  HNQ25_RS20325 (HNQ25_20325) - 4322730..4323173 (-) 444 WP_179545794.1 pilin -
  HNQ25_RS20330 (HNQ25_20330) pilB 4323396..4325099 (+) 1704 WP_179545795.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HNQ25_RS20335 (HNQ25_20335) pilC 4325102..4326322 (+) 1221 WP_185806061.1 type II secretion system F family protein Machinery gene
  HNQ25_RS20340 (HNQ25_20340) pilD 4326323..4327192 (+) 870 WP_179545796.1 A24 family peptidase Machinery gene
  HNQ25_RS20345 (HNQ25_20345) coaE 4327370..4327978 (+) 609 WP_143506136.1 dephospho-CoA kinase -
  HNQ25_RS20350 (HNQ25_20350) yacG 4327975..4328169 (+) 195 WP_179545797.1 DNA gyrase inhibitor YacG -
  HNQ25_RS20355 (HNQ25_20355) - 4328317..4329447 (-) 1131 WP_179545798.1 IS481 family transposase -
  HNQ25_RS20360 (HNQ25_20360) - 4329558..4329773 (-) 216 WP_179545799.1 hypothetical protein -
  HNQ25_RS20365 (HNQ25_20365) - 4329880..4330569 (-) 690 WP_179545800.1 energy-coupling factor ABC transporter permease -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44139.79 Da        Isoelectric Point: 9.7772

>NTDB_id=473281 HNQ25_RS20335 WP_185806061.1 4325102..4326322(+) (pilC) [Pseudomonas sediminis strain B10D7D]
MAERALKTSVFTWEGKNKSGAVVKGEINGQNPSLVKAHLRKQGINPTKVRKKSSLSLGGAGKKIKPMDIALFTRQMATMM
KAGVPLLQSFDIISEGFDNPNMRKLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVESGEQAGALENLLDRIATYKEK
TEALKAKIKKAMNYPIAVIVVAVIVSAILLIKVVPQFEEVFANFGAELPAFTQMVIGISQVMQEWWFVFLIIIFAAAFAF
KEALKRSQKLRDSVDRGVLKLPIVGEILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATNKVKADVSTG
MQLNFSMRTTGTFPSMAVQMTAIGEESGSLDEMLDKVASFYEAEVDNMVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=473281 HNQ25_RS20335 WP_185806061.1 4325102..4326322(+) (pilC) [Pseudomonas sediminis strain B10D7D]
ATGGCGGAAAGAGCTCTAAAAACCAGTGTATTCACCTGGGAAGGCAAGAATAAAAGCGGTGCCGTCGTAAAGGGGGAGAT
CAACGGACAGAACCCGTCCTTGGTCAAGGCACACCTGCGCAAGCAGGGCATCAACCCGACCAAGGTACGTAAGAAGTCGA
GCCTTTCGCTTGGGGGAGCCGGCAAAAAAATCAAGCCCATGGACATCGCCCTGTTCACTCGGCAGATGGCAACCATGATG
AAGGCCGGCGTGCCACTGTTGCAGTCCTTCGACATCATTTCTGAAGGCTTCGACAACCCCAACATGCGCAAACTGGTCGA
TGAAGTGAAACAGGAGGTCGCAGCAGGCAACAGTTTTGCAGCCTCGCTGCGTAAAAAGCCGCAGTACTTCGATGAGCTGT
ACTGCAACCTGGTGGAGTCCGGTGAGCAAGCTGGCGCCCTTGAAAACCTGCTGGATCGCATCGCTACTTACAAAGAAAAG
ACCGAGGCACTGAAAGCCAAGATCAAGAAGGCGATGAATTATCCTATCGCGGTAATCGTGGTTGCAGTCATCGTTTCAGC
CATTTTGCTGATCAAGGTGGTACCACAATTTGAGGAAGTATTTGCCAATTTTGGCGCCGAACTTCCAGCCTTCACTCAAA
TGGTGATTGGCATTTCCCAAGTCATGCAAGAGTGGTGGTTCGTTTTCCTGATCATAATATTCGCTGCGGCTTTTGCCTTC
AAAGAAGCCTTGAAGCGCTCGCAAAAGCTTCGTGACTCCGTTGACCGTGGCGTCCTAAAGCTCCCTATTGTTGGCGAGAT
CCTCTATAAGTCTGCCGTTGCCCGCTTTGCACGAACCCTTTCCACTACCTTTGCGGCAGGCGTACCGCTGGTAGATGCAC
TCGATTCGGTAGCGGGCGCAACCGGCAATGTTGTGTTCAGGAACGCTACCAACAAAGTCAAGGCGGATGTTTCCACAGGC
ATGCAGCTGAACTTCTCGATGCGTACCACCGGCACCTTCCCCAGCATGGCGGTGCAAATGACCGCCATCGGCGAAGAATC
GGGCTCACTGGATGAAATGCTCGACAAAGTGGCCAGCTTCTATGAGGCTGAAGTGGATAATATGGTCGACGGCCTTACCA
GCCTGATGGAGCCTCTGATCATGTCTGTTCTCGGTGTACTGGTCGGCGGTCTGATCATCGCCATGTACCTGCCTATCTTC
CAGCTGGGTTCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.281

100

0.813
  pilC Acinetobacter baumannii D1279779

60

99.754

0.599
  pilC Acinetobacter baylyi ADP1

61.055

98.03

0.599
  pilC Legionella pneumophila strain ERS1305867

52.525

97.537

0.512
  pilG Neisseria gonorrhoeae MS11

44.802

99.507

0.446
  pilG Neisseria meningitidis 44/76-A

44.802

99.507

0.446
  pilC Vibrio cholerae strain A1552

42.469

99.754

0.424
  pilC Vibrio campbellii strain DS40M4

41.162

97.537

0.401