Detailed information NTG0473282

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HNQ25_RS20340
• Genome accession: NZ_CP060009
• Coordinates: 4326323..4327192 (+)
• Length: 289 a.a.
• NCBI ID: WP_179545796.1
• Uniprot ID: -
• Organism: Pseudomonas sediminis strain B10D7D
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4321323..4332192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNQ25_RS20325 (HNQ25_20325)	-	4322730..4323173 (-)	444	WP_179545794.1	pilin	-
HNQ25_RS20330 (HNQ25_20330)	pilB	4323396..4325099 (+)	1704	WP_179545795.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HNQ25_RS20335 (HNQ25_20335)	pilC	4325102..4326322 (+)	1221	WP_185806061.1	type II secretion system F family protein	Machinery gene
HNQ25_RS20340 (HNQ25_20340)	pilD	4326323..4327192 (+)	870	WP_179545796.1	A24 family peptidase	Machinery gene
HNQ25_RS20345 (HNQ25_20345)	coaE	4327370..4327978 (+)	609	WP_143506136.1	dephospho-CoA kinase	-
HNQ25_RS20350 (HNQ25_20350)	yacG	4327975..4328169 (+)	195	WP_179545797.1	DNA gyrase inhibitor YacG	-
HNQ25_RS20355 (HNQ25_20355)	-	4328317..4329447 (-)	1131	WP_179545798.1	IS481 family transposase	-
HNQ25_RS20360 (HNQ25_20360)	-	4329558..4329773 (-)	216	WP_179545799.1	hypothetical protein	-
HNQ25_RS20365 (HNQ25_20365)	-	4329880..4330569 (-)	690	WP_179545800.1	energy-coupling factor ABC transporter permease	-
HNQ25_RS20370 (HNQ25_20370)	-	4330767..4331396 (+)	630	WP_099522574.1	DUF1780 domain-containing protein	-
HNQ25_RS20375 (HNQ25_20375)	-	4331393..4331941 (+)	549	WP_179545801.1	MOSC domain-containing protein	-
HNQ25_RS20380 (HNQ25_20380)	-	4331966..4332139 (+)	174	WP_099522576.1	DUF3094 family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31852.98 Da
• Isoelectric Point: 6.8188

>NTDB_id=473282 HNQ25_RS20340 WP_179545796.1 4326323..4327192(+) (pilD) [Pseudomonas sediminis strain B10D7D]
MLVIDFLASHVLAFVLCALLLGLLVGSFLNVVIYRLPVMLQRDWQSQAREVLELPPAPTAQTFNLILPNSCCTQCGHEIR
PWENIPVISYLFLRGKCSNCKTPISKRYPIVELACGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLV
LPLLWLGLIVNYYGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=473282 HNQ25_RS20340 WP_179545796.1 4326323..4327192(+) (pilD) [Pseudomonas sediminis strain B10D7D]
ATGCTTGTGATCGACTTCCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTGTGCTCTGCTGCTGGGTCTGCTGGTCGGTAG
CTTCCTCAATGTAGTGATCTACCGTCTACCCGTGATGCTGCAACGCGATTGGCAGAGTCAGGCGCGCGAGGTGCTGGAAT
TGCCGCCGGCACCGACCGCTCAGACCTTCAACCTTATCCTGCCCAACTCCTGCTGCACGCAGTGCGGCCATGAGATTCGT
CCCTGGGAGAACATCCCGGTCATCAGCTATCTGTTCCTGCGCGGCAAGTGCTCGAACTGCAAAACCCCGATCAGCAAACG
TTACCCCATCGTCGAACTGGCCTGCGGACTGCTTTCGGCATACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGAG
CGATGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGTTTGATCGATGCTGATCACCAGATTCTGCCCGACGTGCTGGTG
CTGCCGCTGCTATGGCTGGGCTTGATCGTCAATTACTACGGATTGTTCACCAGCCTGGAAGATGCTCTGTGGGGAGCGAT
TGCCGGTTATCTGAGCCTATGGTCGGTGTATTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGGGGCTGGCAGATTCTGCCGCTGACCATTCTGCTGTCGTCGCTGGTCGGC
GCGGTGCTTGGGGTAATCCTGCTGCGCATGCGCGGTAGCGATTCCGGCACACCGATTCCCTTCGGCCCTTATCTGGCGAT
TGCCGGGTGGATCGCCCTGCTGTGGGGCGATGTGATTACCGGCAGTTATCTGAAGTTCGCTGGGTTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.015	94.81	0.512
pilD	Acinetobacter baumannii D1279779	51.408	98.27	0.505
pilD	Vibrio campbellii strain DS40M4	53.114	94.464	0.502
pilD	Acinetobacter nosocomialis M2	51.056	98.27	0.502
pilD	Neisseria gonorrhoeae MS11	50.57	91.003	0.46