Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SG35_RS24835 Genome accession   NZ_CP059735
Coordinates   5697239..5698480 (+) Length   413 a.a.
NCBI ID   WP_044835943.1    Uniprot ID   A0AAF0C2Z7
Organism   Thalassomonas actiniarum strain A5K-106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5692239..5703480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SG35_RS24815 (SG35_024760) - 5692662..5693180 (+) 519 WP_044833609.1 retropepsin-like aspartic protease family protein -
  SG35_RS24820 (SG35_024765) nadC 5693184..5694074 (+) 891 WP_044833608.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SG35_RS24825 (SG35_024770) - 5694864..5695292 (+) 429 WP_044835944.1 pilin -
  SG35_RS24830 (SG35_024775) pilB 5695468..5697168 (+) 1701 WP_053043441.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SG35_RS24835 (SG35_024780) pilC 5697239..5698480 (+) 1242 WP_044835943.1 type II secretion system F family protein Machinery gene
  SG35_RS24840 (SG35_024785) pilD 5698532..5699416 (+) 885 WP_274055281.1 prepilin peptidase Machinery gene
  SG35_RS24845 (SG35_024790) coaE 5699492..5700103 (+) 612 WP_044835942.1 dephospho-CoA kinase -
  SG35_RS24850 (SG35_024795) zapD 5700335..5701084 (+) 750 WP_044835941.1 cell division protein ZapD -
  SG35_RS24855 (SG35_024800) yacG 5701175..5701411 (+) 237 WP_044835940.1 DNA gyrase inhibitor YacG -
  SG35_RS24860 (SG35_024805) mutT 5701445..5701843 (-) 399 WP_044835939.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44593.73 Da        Isoelectric Point: 9.1619

>NTDB_id=471669 SG35_RS24835 WP_044835943.1 5697239..5698480(+) (pilC) [Thalassomonas actiniarum strain A5K-106]
MAASNAKVPVPKALDSFTWQGVNRKGKKVKGELSAASVLELKSQLRKQGITPGRIKKKPKPLFGLGGDKPIVAADIAVMT
RQVATMLGAGVPLVQTIEMIGKGHNNGNMQKLLGEIGNKLQSGIPLSECLREHPLFFDELYCDLVHSGEQSGALETIYDR
IATYKEKAEALKAKIKKAMTYPIAVLVIATIVTSILLIFVVPVFQDIFAGFGAELPGFTLFVIGISEFMQSYWYMMLAAI
FIGGFLFKRAHRNSPKLRDNVDKNILKLPVIGELLQKAAIARYARTLSTTFAAGVPLIDALASAAGASGNAVFRDAILEI
RTEVSSGMQMNLAMRNCSIFPDMVIQMVAIGEESGAVDDMLAKVATVYEQEVDNAVDSLTSLLEPMIMAVLGVVIGGLII
AMYLPIFQIGMIV

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=471669 SG35_RS24835 WP_044835943.1 5697239..5698480(+) (pilC) [Thalassomonas actiniarum strain A5K-106]
ATGGCGGCGAGTAATGCAAAAGTTCCAGTTCCGAAAGCGCTTGATAGTTTCACCTGGCAAGGAGTCAACCGCAAAGGAAA
AAAGGTAAAAGGTGAGTTATCTGCCGCCAGTGTGCTAGAACTTAAAAGCCAACTGAGAAAGCAGGGCATTACTCCCGGGC
GCATTAAAAAGAAACCTAAACCCCTGTTTGGCCTTGGTGGCGATAAGCCTATCGTAGCAGCCGATATTGCAGTGATGACC
CGGCAAGTAGCAACCATGCTCGGCGCCGGCGTACCTTTGGTGCAAACCATAGAAATGATCGGCAAGGGCCACAATAATGG
CAATATGCAAAAGCTATTGGGAGAAATTGGTAATAAACTCCAATCCGGCATCCCGCTTTCAGAATGTTTACGTGAACATC
CGCTTTTTTTTGATGAACTATATTGCGACCTTGTCCATTCAGGTGAACAGTCCGGGGCACTGGAAACCATCTATGACCGC
ATCGCCACCTACAAAGAAAAAGCGGAAGCCCTTAAGGCAAAAATCAAAAAAGCCATGACCTACCCCATTGCCGTGCTGGT
GATTGCCACTATCGTTACCTCTATACTATTGATCTTTGTAGTCCCGGTTTTTCAGGATATTTTTGCCGGCTTTGGCGCCG
AGCTCCCCGGTTTTACCCTATTTGTCATCGGCATCTCTGAATTTATGCAAAGTTATTGGTACATGATGCTAGCGGCAATA
TTTATCGGCGGTTTCCTGTTTAAGCGCGCCCATAGAAACAGCCCCAAGCTACGTGATAATGTCGATAAAAATATTTTAAA
ACTGCCTGTCATCGGGGAATTATTACAAAAAGCCGCCATCGCCCGCTATGCCAGAACCCTATCCACCACCTTTGCAGCCG
GGGTACCGTTAATCGACGCCCTGGCATCCGCTGCCGGAGCCTCCGGCAATGCGGTCTTCAGGGATGCCATTTTGGAGATC
CGCACCGAAGTTTCTTCCGGCATGCAAATGAATTTGGCCATGCGTAATTGCAGCATTTTCCCCGATATGGTGATCCAGAT
GGTCGCCATAGGGGAGGAGTCCGGAGCCGTGGATGACATGCTTGCAAAAGTGGCCACGGTATACGAACAGGAAGTCGATA
ACGCGGTAGATTCATTGACTAGTTTACTTGAGCCTATGATAATGGCGGTTTTAGGGGTGGTGATTGGCGGACTTATCATC
GCCATGTATCTGCCTATTTTCCAAATCGGCATGATAGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-405)

Type II secretion system (T2SS), protein F (T2SSF)

(80-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.705

96.126

0.584
  pilC Acinetobacter baylyi ADP1

53.606

100

0.54
  pilC Acinetobacter baumannii D1279779

55.025

96.368

0.53
  pilC Legionella pneumophila strain ERS1305867

53.383

96.61

0.516
  pilC Vibrio cholerae strain A1552

44.975

96.368

0.433
  pilG Neisseria meningitidis 44/76-A

42.893

97.094

0.416
  pilG Neisseria gonorrhoeae MS11

42.893

97.094

0.416
  pilC Vibrio campbellii strain DS40M4

40.852

96.61

0.395