Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SG35_RS24840 Genome accession   NZ_CP059735
Coordinates   5698532..5699416 (+) Length   294 a.a.
NCBI ID   WP_274055281.1    Uniprot ID   -
Organism   Thalassomonas actiniarum strain A5K-106     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5693532..5704416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SG35_RS24825 (SG35_024770) - 5694864..5695292 (+) 429 WP_044835944.1 pilin -
  SG35_RS24830 (SG35_024775) pilB 5695468..5697168 (+) 1701 WP_053043441.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SG35_RS24835 (SG35_024780) pilC 5697239..5698480 (+) 1242 WP_044835943.1 type II secretion system F family protein Machinery gene
  SG35_RS24840 (SG35_024785) pilD 5698532..5699416 (+) 885 WP_274055281.1 prepilin peptidase Machinery gene
  SG35_RS24845 (SG35_024790) coaE 5699492..5700103 (+) 612 WP_044835942.1 dephospho-CoA kinase -
  SG35_RS24850 (SG35_024795) zapD 5700335..5701084 (+) 750 WP_044835941.1 cell division protein ZapD -
  SG35_RS24855 (SG35_024800) yacG 5701175..5701411 (+) 237 WP_044835940.1 DNA gyrase inhibitor YacG -
  SG35_RS24860 (SG35_024805) mutT 5701445..5701843 (-) 399 WP_044835939.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32903.13 Da        Isoelectric Point: 6.4753

>NTDB_id=471670 SG35_RS24840 WP_274055281.1 5698532..5699416(+) (pilD) [Thalassomonas actiniarum strain A5K-106]
MFDEFTFLLTSSPLYLYLTVAVFSLMVGSFLNVVIYRLPKMLEHEWYLECREYLADELQNSPAKTTQAITLSSPASTCPH
CGHAIRFYENIPVVSWLWLRGKCSQCQKAISWRYPLVETATALLSLVIAMHYGASLQTLLMLVLTWSLICLTMIDLDHMI
LPDQITLPLVWLGLLINISGTFVPLADAVIGATAGYLSLFSVFWLFKLLTGKEGMGQGDFKLLAVFGAWAGWQLLPLLIL
MASAVGAIIGIALIVFKNHQRDQAIPFGPYLAVAGWITMLWGMPMWQWYLGQLG

Nucleotide


Download         Length: 885 bp        

>NTDB_id=471670 SG35_RS24840 WP_274055281.1 5698532..5699416(+) (pilD) [Thalassomonas actiniarum strain A5K-106]
GTGTTTGATGAGTTCACGTTCCTGTTAACATCCTCCCCCTTATACCTGTACCTGACCGTGGCAGTATTTTCCCTGATGGT
AGGCAGCTTTTTAAATGTCGTGATCTACCGCCTGCCTAAAATGCTGGAACACGAATGGTATCTTGAATGCAGGGAGTACC
TGGCAGATGAACTGCAAAACAGCCCGGCAAAAACAACCCAGGCAATCACACTGTCATCCCCGGCTTCTACCTGCCCTCAC
TGTGGTCATGCAATCCGCTTTTATGAAAATATTCCCGTCGTCAGCTGGTTATGGCTGCGGGGAAAATGCAGCCAATGCCA
AAAGGCAATTTCCTGGCGTTACCCCCTGGTAGAAACCGCAACCGCCCTGCTCAGTTTAGTCATTGCCATGCATTATGGCG
CTTCCTTGCAAACCCTGTTGATGTTGGTACTTACCTGGAGTCTGATTTGCCTGACCATGATAGATCTCGACCATATGATC
TTACCGGATCAAATCACCCTCCCCCTGGTTTGGCTGGGATTATTAATCAATATCAGCGGCACTTTTGTACCGCTAGCCGA
CGCCGTTATCGGCGCTACGGCCGGCTATCTCAGTTTGTTCAGTGTCTTTTGGCTGTTTAAACTGTTAACGGGTAAAGAAG
GTATGGGCCAGGGTGACTTTAAACTGTTGGCGGTATTTGGCGCCTGGGCCGGCTGGCAGTTATTGCCTTTGTTGATCTTA
ATGGCATCCGCCGTCGGTGCCATTATCGGCATCGCCTTGATTGTATTCAAAAACCATCAAAGAGACCAGGCCATCCCGTT
CGGCCCCTACCTGGCCGTCGCCGGCTGGATCACTATGTTATGGGGCATGCCGATGTGGCAATGGTACCTGGGACAACTCG
GTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-132)

Type IV leader peptidase family (Peptidase_A24)

(142-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

54.815

91.837

0.503
  pilD Vibrio cholerae strain A1552

54.074

91.837

0.497
  pilD Acinetobacter baumannii D1279779

52.536

93.878

0.493
  pilD Acinetobacter nosocomialis M2

52.174

93.878

0.49
  pilD Neisseria gonorrhoeae MS11

49.064

90.816

0.446