Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SG34_RS03725 Genome accession   NZ_CP059733
Coordinates   837766..839007 (-) Length   413 a.a.
NCBI ID   WP_044836840.1    Uniprot ID   A0AAF0CA86
Organism   Thalassomonas viridans strain XOM25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832766..844007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SG34_RS03700 (SG34_003675) mutT 834262..834669 (+) 408 WP_044842369.1 8-oxo-dGTP diphosphatase MutT -
  SG34_RS03705 (SG34_003680) yacG 834693..834929 (-) 237 WP_044842370.1 DNA gyrase inhibitor YacG -
  SG34_RS03710 (SG34_003685) zapD 835008..835757 (-) 750 WP_044842371.1 cell division protein ZapD -
  SG34_RS03715 (SG34_003690) coaE 835988..836599 (-) 612 WP_044842372.1 dephospho-CoA kinase -
  SG34_RS03720 (SG34_003695) pilD 836668..837552 (-) 885 WP_274038509.1 prepilin peptidase Machinery gene
  SG34_RS03725 (SG34_003700) pilC 837766..839007 (-) 1242 WP_044836840.1 type II secretion system F family protein Machinery gene
  SG34_RS03730 (SG34_003705) pilB 839068..840768 (-) 1701 WP_053046400.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SG34_RS03735 (SG34_003710) - 840947..841363 (-) 417 WP_236701185.1 pilin -
  SG34_RS03740 (SG34_003715) nadC 841747..842637 (-) 891 WP_044836842.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SG34_RS03745 (SG34_003720) - 842641..843159 (-) 519 WP_044836843.1 retropepsin-like aspartic protease family protein -
  SG34_RS03750 (SG34_003725) ampD 843198..843785 (+) 588 WP_044836844.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44658.73 Da        Isoelectric Point: 9.1394

>NTDB_id=471639 SG34_RS03725 WP_044836840.1 837766..839007(-) (pilC) [Thalassomonas viridans strain XOM25]
MAVTNAKVATPKALDSFTWQGVNRKGKKVKGELSAASVLELKSQLRKQGITPGRIKKKPKPLFGLGGDKPITPGDIAVMT
RQVATMLGAGVPLVQTIEMIGKGHNNGNMQKLLGEIGNKLQSGIPLSECLREHPLFFDELYCDLVHSGEQSGALETIYDR
IATYKEKAEALKAKIKKAMTYPIAVLIIATIVTSILLIFVVPVFQDIFAGFGADLPGFTMFVIGISEFMQSYWYMMLAAI
FIGGYLFKRAHRNSPKLRDNVDKNILKLPVVGELLQKAAIARYARTLSTTFAAGVPLIDALASAAGASGNAVFRDAILEI
RNEVSSGMQMNLAMRNCSIFPDMVIQMVAIGEESGAVDDMLAKVATVYEQEVDNAVDSLTSLLEPMIMAVLGVVIGGLII
AMYLPIFQIGMIV

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=471639 SG34_RS03725 WP_044836840.1 837766..839007(-) (pilC) [Thalassomonas viridans strain XOM25]
ATGGCGGTGACTAATGCAAAAGTAGCAACCCCGAAAGCGCTTGATAGTTTTACCTGGCAAGGGGTTAACCGTAAAGGCAA
AAAGGTAAAAGGTGAGTTGTCCGCCGCCAGTGTGCTGGAGCTGAAAAGCCAGTTAAGAAAACAGGGCATTACTCCCGGAC
GTATTAAAAAGAAACCTAAACCCTTGTTCGGCCTCGGCGGCGATAAACCGATAACCCCGGGGGATATCGCGGTCATGACC
CGGCAGGTCGCCACTATGCTGGGGGCCGGCGTACCTCTGGTTCAAACCATAGAAATGATCGGCAAAGGCCATAATAACGG
CAATATGCAAAAACTGCTGGGAGAAATCGGCAATAAGCTCCAGTCCGGTATTCCCCTTTCGGAATGCTTACGTGAACACC
CGCTCTTTTTTGATGAACTCTACTGCGACCTGGTCCACTCCGGCGAGCAGTCCGGTGCGCTGGAAACCATCTATGACCGT
ATCGCCACCTATAAAGAAAAAGCGGAAGCCCTCAAGGCAAAAATCAAAAAGGCCATGACCTATCCGATTGCGGTACTGAT
CATTGCCACCATAGTGACCTCCATTTTATTGATTTTTGTGGTGCCGGTTTTTCAGGATATCTTCGCCGGCTTCGGCGCCG
ACCTGCCCGGTTTTACCATGTTCGTGATCGGCATTTCCGAATTTATGCAAAGTTACTGGTATATGATGCTGGCGGCGATC
TTTATCGGCGGTTACCTGTTTAAACGCGCCCACAGAAACAGCCCCAAACTGCGCGACAATGTCGATAAAAACATTTTAAA
GCTTCCCGTCGTGGGAGAGCTGTTACAAAAAGCCGCCATCGCCCGCTATGCCAGAACCTTGTCCACCACCTTTGCCGCCG
GGGTGCCGCTAATCGATGCCCTGGCTTCCGCCGCCGGCGCCTCCGGCAACGCCGTTTTCCGGGATGCCATCCTGGAAATT
CGCAATGAAGTTTCTTCCGGGATGCAAATGAACCTGGCCATGCGCAACTGCAGCATTTTCCCCGATATGGTGATCCAGAT
GGTGGCTATCGGGGAGGAATCAGGGGCGGTGGACGATATGCTGGCAAAAGTGGCCACGGTATACGAGCAGGAAGTGGATA
ACGCGGTAGACTCATTGACTAGTTTGCTGGAGCCTATGATAATGGCTGTTTTAGGCGTGGTGATTGGCGGACTGATCATC
GCCATGTACCTGCCCATTTTCCAAATCGGCATGATAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-405)

Type II secretion system (T2SS), protein F (T2SSF)

(80-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.957

96.126

0.586
  pilC Acinetobacter baumannii D1279779

54.237

100

0.542
  pilC Acinetobacter baylyi ADP1

54.637

96.61

0.528
  pilC Legionella pneumophila strain ERS1305867

53.383

96.61

0.516
  pilC Vibrio cholerae strain A1552

44.472

96.368

0.429
  pilG Neisseria meningitidis 44/76-A

42.893

97.094

0.416
  pilG Neisseria gonorrhoeae MS11

42.893

97.094

0.416
  pilC Vibrio campbellii strain DS40M4

41.103

96.61

0.397