Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SG34_RS03720 Genome accession   NZ_CP059733
Coordinates   836668..837552 (-) Length   294 a.a.
NCBI ID   WP_274038509.1    Uniprot ID   -
Organism   Thalassomonas viridans strain XOM25     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831668..842552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SG34_RS03700 (SG34_003675) mutT 834262..834669 (+) 408 WP_044842369.1 8-oxo-dGTP diphosphatase MutT -
  SG34_RS03705 (SG34_003680) yacG 834693..834929 (-) 237 WP_044842370.1 DNA gyrase inhibitor YacG -
  SG34_RS03710 (SG34_003685) zapD 835008..835757 (-) 750 WP_044842371.1 cell division protein ZapD -
  SG34_RS03715 (SG34_003690) coaE 835988..836599 (-) 612 WP_044842372.1 dephospho-CoA kinase -
  SG34_RS03720 (SG34_003695) pilD 836668..837552 (-) 885 WP_274038509.1 prepilin peptidase Machinery gene
  SG34_RS03725 (SG34_003700) pilC 837766..839007 (-) 1242 WP_044836840.1 type II secretion system F family protein Machinery gene
  SG34_RS03730 (SG34_003705) pilB 839068..840768 (-) 1701 WP_053046400.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SG34_RS03735 (SG34_003710) - 840947..841363 (-) 417 WP_236701185.1 pilin -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32757.18 Da        Isoelectric Point: 6.7236

>NTDB_id=471638 SG34_RS03720 WP_274038509.1 836668..837552(-) (pilD) [Thalassomonas viridans strain XOM25]
MFDEFIFLLTSSPLYLYLLVGVFSLMVGSFLNVVIYRLPKMLEHEWYLECREYLADELKDSPAKAVKAMTLSSPASTCPH
CGHAIRFYENIPVLSWLWLKGKCSQCQKAISWRYPLVETATALLSLVIAAHYGASLQTLLMLLLTWCLICLTLIDLDHMI
LPDQITLPLVWLGLLININGTFVPLADAVIGAAAGYLSLFCVFWGFKLLTGKEGMGQGDFKLLAVFGAWAGWQLLPLLIL
MASAVGAVIGIALIAFKNHQKEQPIPFGPYLAIAGWITILWGMPIWQWYLAQLG

Nucleotide


Download         Length: 885 bp        

>NTDB_id=471638 SG34_RS03720 WP_274038509.1 836668..837552(-) (pilD) [Thalassomonas viridans strain XOM25]
GTGTTTGATGAATTCATTTTCCTGCTAACCTCTTCCCCCCTATACCTGTACCTGCTTGTCGGGGTATTTTCCCTGATGGT
AGGCAGCTTTTTAAATGTTGTTATCTACCGGCTGCCTAAAATGTTGGAGCACGAGTGGTATCTTGAGTGCCGGGAATACC
TGGCGGATGAACTTAAAGACAGCCCGGCAAAAGCAGTCAAAGCCATGACACTGTCTTCCCCGGCTTCCACCTGCCCCCAC
TGCGGCCATGCGATACGCTTTTATGAAAACATTCCGGTGCTGAGCTGGTTGTGGCTCAAGGGGAAATGCAGTCAGTGCCA
AAAAGCCATTTCCTGGCGCTACCCCCTGGTGGAAACAGCTACCGCCCTGCTCAGCCTGGTGATCGCCGCCCATTACGGCG
CTTCCTTGCAAACCCTGCTGATGCTGCTCCTGACCTGGTGCCTGATTTGCCTGACCCTGATAGATCTCGATCATATGATC
TTACCGGACCAGATCACCCTGCCCCTGGTTTGGCTGGGACTGCTGATAAATATCAACGGCACTTTTGTGCCCTTAGCCGA
TGCCGTGATCGGGGCCGCGGCCGGTTACCTGAGTTTGTTCTGTGTCTTTTGGGGCTTCAAACTGCTCACGGGTAAAGAAG
GCATGGGCCAGGGGGACTTTAAATTGCTGGCAGTTTTTGGCGCCTGGGCCGGCTGGCAATTGCTGCCGCTGTTGATCCTG
ATGGCATCAGCGGTTGGCGCTGTTATCGGCATCGCCCTGATCGCTTTTAAAAATCATCAAAAAGAGCAGCCTATTCCCTT
CGGTCCCTACCTGGCAATCGCCGGATGGATCACTATATTGTGGGGTATGCCGATATGGCAGTGGTACCTGGCGCAACTGG
GTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(142-251)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

53.48

92.857

0.497
  pilD Vibrio cholerae strain A1552

52.364

93.537

0.49
  pilD Acinetobacter baumannii D1279779

51.087

93.878

0.48
  pilD Acinetobacter nosocomialis M2

50.725

93.878

0.476
  pilD Neisseria gonorrhoeae MS11

46.931

94.218

0.442