Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H3N35_RS23965 Genome accession   NZ_CP059693
Coordinates   5547972..5549213 (+) Length   413 a.a.
NCBI ID   WP_274051361.1    Uniprot ID   -
Organism   Thalassomonas haliotis strain A5K-61T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5542972..5554213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3N35_RS23940 (H3N35_23800) ampD 5543124..5543711 (-) 588 WP_274051353.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  H3N35_RS23945 (H3N35_23805) - 5543750..5544268 (+) 519 WP_274051354.1 retropepsin-like aspartic protease family protein -
  H3N35_RS23950 (H3N35_23810) nadC 5544272..5545162 (+) 891 WP_274051356.1 carboxylating nicotinate-nucleotide diphosphorylase -
  H3N35_RS23955 (H3N35_23815) - 5545597..5546025 (+) 429 WP_274051358.1 pilin -
  H3N35_RS23960 (H3N35_23820) pilB 5546202..5547902 (+) 1701 WP_274051360.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H3N35_RS23965 (H3N35_23825) pilC 5547972..5549213 (+) 1242 WP_274051361.1 type II secretion system F family protein Machinery gene
  H3N35_RS23970 (H3N35_23830) pilD 5549265..5550149 (+) 885 WP_274051362.1 prepilin peptidase Machinery gene
  H3N35_RS23975 (H3N35_23835) coaE 5550225..5550836 (+) 612 WP_274051364.1 dephospho-CoA kinase -
  H3N35_RS23980 (H3N35_23840) zapD 5551067..5551816 (+) 750 WP_274051365.1 cell division protein ZapD -
  H3N35_RS23985 (H3N35_23845) yacG 5551903..5552139 (+) 237 WP_274051366.1 DNA gyrase inhibitor YacG -
  H3N35_RS23990 (H3N35_23850) mutT 5552163..5552561 (-) 399 WP_274051367.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44567.69 Da        Isoelectric Point: 9.1619

>NTDB_id=471361 H3N35_RS23965 WP_274051361.1 5547972..5549213(+) (pilC) [Thalassomonas haliotis strain A5K-61T]
MAVSNAKVPAPKALDSFTWQGVNRKGKKVKGELSAASVLELKSQLRKQGITPGRIKKKPKPLFGLGGDKAIVAADIAVMT
RQVATMLGAGVPLVQTIEMIGKGHNNGNMQKLLGEIGNKLQSGIPLSECLREHPLFFDELYCDLVHSGEQSGALETIYDR
IATYKEKAEALKAKIKKAMTYPIAVLVIATIVTSILLIFVVPVFQDIFAGFGAELPGFTLFVIGISEFMQSYWYMMLAAI
FIGGFLFKRAHRNSPKLRDNVDKNILKLPVIGELLQKAAIARYARTLSTTFAAGVPLIDALASAAGASGNAVFRDAILEI
RTEVSSGMQMNLAMRNCSIFPDMVIQMVAIGEESGAVDDMLAKVATVYEQEVDNAVDSLTSLLEPMIMAVLGVVIGGLII
AMYLPIFQIGMIV

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=471361 H3N35_RS23965 WP_274051361.1 5547972..5549213(+) (pilC) [Thalassomonas haliotis strain A5K-61T]
ATGGCGGTGAGTAATGCAAAAGTTCCAGCCCCGAAAGCACTTGATAGTTTCACCTGGCAGGGAGTCAACCGCAAAGGCAA
GAAAGTAAAAGGTGAGTTGTCTGCCGCCAGTGTCTTGGAGCTGAAAAGCCAGCTGAGAAAACAGGGCATCACTCCCGGGC
GAATTAAAAAGAAGCCTAAACCCCTGTTTGGCCTTGGCGGCGATAAAGCCATAGTCGCTGCCGACATCGCGGTGATGACC
CGACAAGTGGCCACTATGCTCGGTGCCGGTGTGCCTTTAGTGCAAACCATAGAAATGATCGGCAAGGGTCACAATAACGG
CAATATGCAAAAGCTGCTGGGAGAAATCGGCAATAAACTCCAGTCCGGTATTCCACTTTCAGAATGTTTACGCGAACACC
CGCTTTTTTTTGATGAACTATACTGCGATCTGGTGCATTCAGGCGAGCAGTCCGGGGCATTGGAAACCATCTATGACCGC
ATCGCCACCTATAAAGAAAAAGCAGAAGCCCTGAAGGCAAAAATCAAAAAAGCCATGACCTACCCCATTGCCGTATTGGT
GATTGCCACCATTGTCACCTCTATATTGTTAATCTTTGTGGTGCCGGTTTTTCAGGATATTTTTGCCGGTTTTGGCGCCG
AACTGCCCGGCTTTACCCTGTTTGTCATCGGCATTTCTGAATTTATGCAAAGTTACTGGTATATGATGTTAGCGGCAATA
TTTATCGGCGGTTTCCTGTTTAAGCGCGCCCATAGAAACAGCCCTAAGCTGCGTGATAATGTTGATAAGAATATTCTCAA
ACTGCCGGTGATCGGGGAATTACTACAAAAAGCTGCCATCGCCCGTTATGCCAGAACCCTATCCACTACCTTTGCCGCCG
GTGTTCCCTTAATCGACGCCCTGGCATCCGCGGCCGGCGCTTCCGGCAACGCCGTCTTCAGGGATGCTATTTTGGAAATC
CGCACCGAAGTTTCTTCCGGCATGCAAATGAATTTAGCCATGCGAAATTGCAGTATTTTCCCCGATATGGTGATCCAGAT
GGTTGCCATAGGGGAGGAGTCAGGGGCTGTTGATGACATGCTGGCAAAAGTGGCTACTGTATATGAACAAGAGGTCGATA
ACGCGGTAGACTCATTGACTAGTTTACTTGAGCCTATGATAATGGCGGTTTTAGGCGTAGTAATTGGCGGACTTATCATC
GCCATGTATCTACCCATTTTCCAAATCGGCATGATAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-405)

Type II secretion system (T2SS), protein F (T2SSF)

(80-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.705

96.126

0.584
  pilC Acinetobacter baumannii D1279779

53.995

100

0.54
  pilC Acinetobacter baylyi ADP1

54.386

96.61

0.525
  pilC Legionella pneumophila strain ERS1305867

53.383

96.61

0.516
  pilC Vibrio cholerae strain A1552

44.975

96.368

0.433
  pilG Neisseria meningitidis 44/76-A

42.893

97.094

0.416
  pilG Neisseria gonorrhoeae MS11

42.893

97.094

0.416
  pilC Vibrio campbellii strain DS40M4

41.133

98.305

0.404