Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H3N35_RS23970 Genome accession   NZ_CP059693
Coordinates   5549265..5550149 (+) Length   294 a.a.
NCBI ID   WP_274051362.1    Uniprot ID   -
Organism   Thalassomonas haliotis strain A5K-61T     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5544265..5555149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3N35_RS23950 (H3N35_23810) nadC 5544272..5545162 (+) 891 WP_274051356.1 carboxylating nicotinate-nucleotide diphosphorylase -
  H3N35_RS23955 (H3N35_23815) - 5545597..5546025 (+) 429 WP_274051358.1 pilin -
  H3N35_RS23960 (H3N35_23820) pilB 5546202..5547902 (+) 1701 WP_274051360.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H3N35_RS23965 (H3N35_23825) pilC 5547972..5549213 (+) 1242 WP_274051361.1 type II secretion system F family protein Machinery gene
  H3N35_RS23970 (H3N35_23830) pilD 5549265..5550149 (+) 885 WP_274051362.1 prepilin peptidase Machinery gene
  H3N35_RS23975 (H3N35_23835) coaE 5550225..5550836 (+) 612 WP_274051364.1 dephospho-CoA kinase -
  H3N35_RS23980 (H3N35_23840) zapD 5551067..5551816 (+) 750 WP_274051365.1 cell division protein ZapD -
  H3N35_RS23985 (H3N35_23845) yacG 5551903..5552139 (+) 237 WP_274051366.1 DNA gyrase inhibitor YacG -
  H3N35_RS23990 (H3N35_23850) mutT 5552163..5552561 (-) 399 WP_274051367.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33042.33 Da        Isoelectric Point: 6.4740

>NTDB_id=471362 H3N35_RS23970 WP_274051362.1 5549265..5550149(+) (pilD) [Thalassomonas haliotis strain A5K-61T]
MFDEFTLLLTSSPLYLYLTVAVFSLMVGSFLNVVIYRLPKMLEHEWYLECREYLADEVKNSPAKTTQAITLSSPASTCPH
CGHAIRFYENIPVISWLWLRGKCSQCQRAISWRYPLVETATALLSLVIAMHYGATLQTLLMLILTWCLICLTVIDFDHMI
LPDQITLPLVWLGLLININGTFVPLADAVIGATAGYLSLFSVFWLFKLLTGKEGMGQGDFKLLAVFGAWAGWQLLPLLIL
MASAVGAIIGIALIVFKNHQRDQAIPFGPYLAVAGWITMLWGMPMWQWYLEQLG

Nucleotide


Download         Length: 885 bp        

>NTDB_id=471362 H3N35_RS23970 WP_274051362.1 5549265..5550149(+) (pilD) [Thalassomonas haliotis strain A5K-61T]
GTGTTTGATGAGTTCACCTTACTGTTAACATCTTCCCCCTTATACCTGTACCTGACCGTGGCAGTGTTTTCACTGATGGT
AGGCAGTTTTTTGAATGTCGTTATCTACCGCTTACCTAAGATGTTAGAGCACGAATGGTATCTTGAGTGCAGGGAATACC
TGGCCGATGAAGTGAAAAACAGCCCGGCAAAAACAACTCAGGCAATCACCTTATCATCCCCGGCTTCTACCTGCCCCCAC
TGCGGTCATGCCATCCGTTTTTATGAAAATATCCCCGTTATCAGCTGGTTATGGCTACGGGGAAAGTGCAGTCAATGCCA
AAGGGCAATTTCCTGGCGCTACCCCCTGGTGGAAACGGCTACCGCCCTGCTCAGCTTAGTGATTGCCATGCATTATGGCG
CAACATTACAAACCCTGTTGATGCTGATACTGACCTGGTGCCTGATTTGCCTGACGGTAATAGATTTCGACCATATGATC
TTACCGGATCAAATCACCCTGCCCCTGGTTTGGCTGGGATTATTAATCAATATCAACGGTACTTTTGTGCCCCTGGCCGA
TGCCGTTATCGGCGCTACCGCCGGTTATCTCAGCTTATTCAGTGTCTTCTGGCTGTTTAAACTGTTAACGGGTAAAGAAG
GCATGGGTCAGGGCGATTTTAAGCTGTTGGCGGTTTTTGGCGCCTGGGCCGGCTGGCAACTATTACCGCTGTTGATCTTG
ATGGCATCTGCCGTCGGCGCCATTATCGGCATTGCCTTGATCGTCTTTAAAAACCATCAAAGAGACCAGGCCATCCCCTT
CGGTCCCTACCTGGCCGTCGCCGGCTGGATCACTATGTTATGGGGCATGCCGATGTGGCAATGGTACCTGGAACAATTAG
GCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-132)

Type IV leader peptidase family (Peptidase_A24)

(142-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

54.212

92.857

0.503
  pilD Vibrio cholerae strain A1552

54.444

91.837

0.5
  pilD Acinetobacter baumannii D1279779

53.091

93.537

0.497
  pilD Acinetobacter nosocomialis M2

52.727

93.537

0.493
  pilD Neisseria gonorrhoeae MS11

47.636

93.537

0.446