Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   H3L92_RS01155 Genome accession   NZ_CP059570
Coordinates   257756..258994 (+) Length   412 a.a.
NCBI ID   WP_085366428.1    Uniprot ID   A0A1X3D6F8
Organism   Neisseria dentiae strain DSM 19151     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 252756..263994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS01135 (H3L92_01135) groES 254007..254294 (-) 288 WP_085366422.1 co-chaperone GroES -
  H3L92_RS01140 (H3L92_01140) - 254562..255182 (-) 621 WP_085366424.1 isochorismatase family protein -
  H3L92_RS01150 (H3L92_01150) pilF 255884..257563 (+) 1680 WP_085366426.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H3L92_RS01155 (H3L92_01155) pilG 257756..258994 (+) 1239 WP_085366428.1 type II secretion system F family protein Machinery gene
  H3L92_RS01160 (H3L92_01160) pilD 258996..259859 (+) 864 WP_085366430.1 A24 family peptidase Machinery gene
  H3L92_RS01165 (H3L92_01165) coaE 259973..260593 (+) 621 WP_085366432.1 dephospho-CoA kinase -
  H3L92_RS01170 (H3L92_01170) zapD 260590..261348 (+) 759 WP_085366434.1 cell division protein ZapD -
  H3L92_RS01175 (H3L92_01175) yacG 261359..261562 (+) 204 WP_085366436.1 DNA gyrase inhibitor YacG -
  H3L92_RS01180 (H3L92_01180) - 261836..262840 (-) 1005 WP_174222533.1 IS5 family transposase -
  H3L92_RS01185 (H3L92_01185) rfbD 262962..263828 (-) 867 WP_085365140.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45308.46 Da        Isoelectric Point: 10.0560

>NTDB_id=470815 H3L92_RS01155 WP_085366428.1 257756..258994(+) (pilG) [Neisseria dentiae strain DSM 19151]
MIKSNIGSRSAKKDKGVRFSFEGRNIDTEQMVRGEVVAKNEEEARKKLQRRGIKPLRVSKVKAVRKKRITQEDITVFTRQ
LATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQVRADVEQGSALGKAFSKHPKYFDRFYCNLIAAGEAGGVLESLLDKLA
VYKEKTQAIKKKVKSALTYPIAIVVVAVVLVFIMMVFVLPEFGKVYSSMGAELPGLTQIVMNMSDLMVKYAWVIVVGTIA
VGFGLYQWYKRSPMLQKRVDAALLKLPIFGDIVRKATIARWARTTATLFTAGVPLVEVLDSVSGAAGNILYEEATQDIRA
KVTQGLSLTSSMQGTDMFPNMVLQMAAIGEESGSLDDMLNKAAEFYEDEVDNAVAQLSSLMEPIIMVVLGSIIGVILVAM
YLPLFNLGNVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=470815 H3L92_RS01155 WP_085366428.1 257756..258994(+) (pilG) [Neisseria dentiae strain DSM 19151]
ATGATTAAAAGCAATATTGGCAGCCGCTCGGCCAAAAAAGACAAGGGCGTGCGTTTTTCTTTTGAAGGCAGAAACATAGA
TACCGAGCAAATGGTGCGCGGTGAAGTGGTGGCCAAAAACGAAGAAGAAGCACGCAAAAAGTTACAGCGGCGCGGTATCA
AGCCGTTACGCGTGAGCAAGGTTAAAGCGGTACGCAAAAAGCGCATCACCCAAGAAGACATTACCGTATTCACCCGCCAG
CTCGCCACCATGATGAAGGCCGGTTTGCCTTTGATGCAGGCGTTTGAAATCGTGGCGCGCGGCCACTCCAACCCTTCCAT
GACGCAAATGCTGATGCAGGTGCGTGCCGATGTGGAACAGGGCAGCGCGTTGGGTAAGGCGTTCTCCAAACACCCCAAAT
ATTTCGACCGTTTTTATTGCAATCTGATTGCCGCCGGTGAGGCGGGCGGCGTGCTCGAATCATTGCTGGACAAATTGGCG
GTGTATAAAGAAAAAACCCAAGCCATCAAAAAGAAAGTGAAGAGCGCGCTAACTTATCCGATTGCCATTGTGGTGGTGGC
CGTTGTGCTGGTGTTTATCATGATGGTGTTCGTGTTGCCGGAGTTCGGTAAAGTATATAGCAGCATGGGGGCGGAGTTGC
CCGGGTTAACCCAAATCGTAATGAACATGTCGGACTTGATGGTGAAGTATGCCTGGGTAATCGTGGTCGGTACCATTGCG
GTCGGTTTCGGCCTGTATCAGTGGTATAAAAGATCGCCCATGCTGCAAAAGCGGGTTGATGCGGCTTTGCTCAAGCTGCC
GATTTTCGGTGATATTGTGCGCAAGGCCACGATTGCACGCTGGGCACGCACTACTGCCACATTGTTTACTGCCGGCGTGC
CTTTGGTGGAAGTGTTGGATTCGGTATCCGGCGCGGCGGGCAATATTCTTTATGAAGAAGCCACACAGGATATTCGCGCC
AAAGTTACTCAGGGTTTGTCGCTGACTTCCAGTATGCAGGGTACCGATATGTTCCCCAATATGGTGTTGCAGATGGCTGC
CATCGGCGAAGAATCAGGCTCATTGGACGATATGCTGAATAAAGCCGCCGAATTTTATGAAGACGAGGTGGATAATGCCG
TTGCCCAGCTTTCATCGCTGATGGAGCCGATTATCATGGTGGTGCTCGGTTCGATTATCGGCGTGATTTTGGTTGCGATG
TATCTGCCCCTGTTCAACCTTGGTAATGTGGTGGGCTGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

69.324

100

0.697
  pilG Neisseria meningitidis 44/76-A

68.841

100

0.692
  pilC Acinetobacter baumannii D1279779

46.366

96.845

0.449
  pilC Legionella pneumophila strain ERS1305867

46.482

96.602

0.449
  pilC Acinetobacter baylyi ADP1

45.614

96.845

0.442
  pilC Pseudomonas stutzeri DSM 10701

44.584

96.359

0.43
  pilC Vibrio cholerae strain A1552

39.196

96.602

0.379
  pilC Vibrio campbellii strain DS40M4

39.231

94.66

0.371