Detailed information NTG0470816

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H3L92_RS01160
• Genome accession: NZ_CP059570
• Coordinates: 258996..259859 (+)
• Length: 287 a.a.
• NCBI ID: WP_085366430.1
• Uniprot ID: -
• Organism: Neisseria dentiae strain DSM 19151
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 253996..264859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H3L92_RS01135 (H3L92_01135)	groES	254007..254294 (-)	288	WP_085366422.1	co-chaperone GroES	-
H3L92_RS01140 (H3L92_01140)	-	254562..255182 (-)	621	WP_085366424.1	isochorismatase family protein	-
H3L92_RS01150 (H3L92_01150)	pilF	255884..257563 (+)	1680	WP_085366426.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H3L92_RS01155 (H3L92_01155)	pilG	257756..258994 (+)	1239	WP_085366428.1	type II secretion system F family protein	Machinery gene
H3L92_RS01160 (H3L92_01160)	pilD	258996..259859 (+)	864	WP_085366430.1	A24 family peptidase	Machinery gene
H3L92_RS01165 (H3L92_01165)	coaE	259973..260593 (+)	621	WP_085366432.1	dephospho-CoA kinase	-
H3L92_RS01170 (H3L92_01170)	zapD	260590..261348 (+)	759	WP_085366434.1	cell division protein ZapD	-
H3L92_RS01175 (H3L92_01175)	yacG	261359..261562 (+)	204	WP_085366436.1	DNA gyrase inhibitor YacG	-
H3L92_RS01180 (H3L92_01180)	-	261836..262840 (-)	1005	WP_174222533.1	IS5 family transposase	-
H3L92_RS01185 (H3L92_01185)	rfbD	262962..263828 (-)	867	WP_085365140.1	dTDP-4-dehydrorhamnose reductase	-
H3L92_RS01190 (H3L92_01190)	rfbC	263825..264361 (-)	537	WP_085365139.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 30965.26 Da
• Isoelectric Point: 8.9270

>NTDB_id=470816 H3L92_RS01160 WP_085366430.1 258996..259859(+) (pilD) [Neisseria dentiae strain DSM 19151]
MLDFLQELAPFAVPLAALFGLLTGSFLNVVIYRVPVMMERGWTAFAKEHLGLVLTAEERQPFNLIKPDSRCPKCHAPVKP
WQNIPVVSYLLLGGKCGSCKTPISKRYPLVELLTGVLFAVVAWQYGWTVVALGGVVLTAMLIALTFIDADTQYLPDQLTL
PLVWLGLLFNLNGAFVPLTSAVLGAVCGYMSLWLLCYIYKLLTGKIGMGGGDFKLLAALGAWLGVGVLPVLVFMAALIGV
VAALVMRVAKGQQFAFGPSLAMAGWLIFIANDKITAAVKWWLGASGF

Nucleotide

• Length: 864 bp

>NTDB_id=470816 H3L92_RS01160 WP_085366430.1 258996..259859(+) (pilD) [Neisseria dentiae strain DSM 19151]
ATGCTGGATTTTCTTCAAGAGCTGGCACCCTTCGCGGTGCCTTTGGCCGCTTTGTTCGGTTTGCTGACAGGCAGTTTTTT
AAATGTGGTGATTTACCGCGTGCCGGTGATGATGGAGCGCGGATGGACGGCATTTGCCAAAGAACACCTGGGTTTGGTGC
TTACGGCCGAAGAACGGCAGCCTTTCAATCTGATTAAACCGGATTCCCGCTGTCCGAAGTGTCATGCTCCGGTCAAACCT
TGGCAAAATATTCCGGTGGTCAGCTATTTGTTGTTGGGCGGAAAGTGCGGAAGCTGCAAAACCCCGATCAGCAAGCGTTA
TCCTTTGGTAGAGCTGTTAACCGGTGTATTGTTTGCCGTAGTGGCGTGGCAATACGGATGGACTGTGGTTGCTTTGGGCG
GCGTGGTGCTGACCGCCATGCTGATTGCCTTAACCTTTATCGATGCCGATACGCAATACCTACCTGATCAATTAACCCTG
CCGTTGGTATGGTTGGGTTTGCTGTTTAATTTGAACGGCGCTTTTGTGCCGCTTACTTCGGCTGTGCTGGGTGCGGTGTG
CGGGTATATGAGCTTGTGGCTGCTGTGTTATATTTACAAGCTGCTCACCGGCAAAATCGGCATGGGCGGCGGTGACTTCA
AGCTGTTGGCGGCGCTGGGCGCATGGTTGGGAGTGGGCGTATTGCCCGTATTGGTATTTATGGCCGCCCTGATCGGTGTG
GTTGCCGCGCTGGTAATGCGGGTGGCCAAAGGCCAGCAGTTTGCATTCGGTCCGAGTTTGGCCATGGCCGGCTGGCTGAT
TTTTATTGCCAACGATAAAATCACCGCTGCGGTGAAATGGTGGTTGGGCGCTTCCGGGTTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	73.381	96.864	0.711
pilD	Vibrio cholerae strain A1552	49.057	92.334	0.453
pilD	Acinetobacter nosocomialis M2	47.253	95.122	0.449
pilD	Acinetobacter baumannii D1279779	47.253	95.122	0.449
pilD	Vibrio campbellii strain DS40M4	45.693	93.031	0.425