Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   H3L95_RS12770 Genome accession   NZ_CP059566
Coordinates   2693835..2695076 (-) Length   413 a.a.
NCBI ID   WP_003757131.1    Uniprot ID   C6M3E2
Organism   Neisseria sicca strain DSM 17713     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2688835..2700076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS12740 (H3L95_12740) - 2689505..2690371 (-) 867 WP_003757139.1 hypothetical protein -
  H3L95_RS12745 (H3L95_12745) - 2690404..2691255 (-) 852 WP_003757138.1 mechanosensitive ion channel family protein -
  H3L95_RS12750 (H3L95_12750) - 2691559..2691894 (+) 336 WP_003757137.1 hypothetical protein -
  H3L95_RS12755 (H3L95_12755) yacG 2692099..2692284 (-) 186 WP_040668227.1 DNA gyrase inhibitor YacG -
  H3L95_RS12760 (H3L95_12760) coaE 2692339..2692968 (-) 630 WP_003757134.1 dephospho-CoA kinase -
  H3L95_RS12765 (H3L95_12765) pilD 2692970..2693833 (-) 864 WP_003757133.1 A24 family peptidase Machinery gene
  H3L95_RS12770 (H3L95_12770) pilG 2693835..2695076 (-) 1242 WP_003757131.1 type II secretion system F family protein Machinery gene
  H3L95_RS12775 (H3L95_12775) pilF 2695148..2696827 (-) 1680 WP_003757129.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H3L95_RS12780 (H3L95_12780) - 2697352..2697825 (-) 474 WP_003757128.1 outer membrane protein assembly factor BamE -
  H3L95_RS12785 (H3L95_12785) - 2697890..2699149 (-) 1260 WP_003757126.1 YadA family autotransporter adhesin -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45756.93 Da        Isoelectric Point: 9.9835

>NTDB_id=470756 H3L95_RS12770 WP_003757131.1 2693835..2695076(-) (pilG) [Neisseria sicca strain DSM 17713]
MAQAEQKRGLFAQKNKGKRFTFEGKNTNTDQLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKATKKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRADVEQGSALGKSFAKYPKYFDRFYCNLIAAGEAGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTKIVMDISKIFVEYGWLMIVIVI
AICFGVYKLHEKSPNFQKRIDAMVLRLPIFGQIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGAAGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVAQLSSLMEPIIMVVLGSIIGTLLVA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=470756 H3L95_RS12770 WP_003757131.1 2693835..2695076(-) (pilG) [Neisseria sicca strain DSM 17713]
ATGGCTCAAGCAGAGCAAAAAAGAGGCTTATTCGCTCAAAAAAATAAAGGCAAACGTTTTACGTTTGAAGGTAAAAATAC
CAATACGGATCAATTGGTCCGAGGCGAAGTAGTCGCCAAAGACGAAGAAGAAGCGCGTAAAAAGCTCCAACGCCGCGGGA
TACGCCCTTTACGTATCAGTAAGGTAAAGGCAACTAAAAAGCGTCGTATTACTCAGGAAGACATTACTGTCTTTACCCGT
CAACTCGCCACCATGATGAAAGCAGGTCTGCCTTTAATGCAGGCTTTTGAAATTGTCGCACGCGGACACTCCAACCCATC
CATGACTGAAATGTTGATGCAAGTCCGTGCAGATGTGGAACAAGGTAGTGCATTAGGTAAATCATTTGCCAAATACCCAA
AATATTTCGACCGTTTTTATTGCAATCTGATTGCGGCCGGCGAAGCTGGCGGTGTTTTGGAAAGCCTGTTGGATAAACTT
GCTGTATATAAAGAGAAAACGCAAGCCATTAAGAAAAAAGTGAAAACCGCGCTGACGTACCCAATTTCTATTGTTGTTGT
TGCAATAGCATTGATCTTCGTAATGATGCGTTGGGTATTACCTGAATTTGGTAAAGTTTATGCTGGAATGGGTGCTGAAT
TGCCTGGTTTAACCAAAATTGTTATGGATATTTCCAAAATATTCGTGGAATATGGGTGGCTGATGATTGTTATAGTTATT
GCCATTTGTTTTGGTGTTTATAAACTACATGAAAAATCACCAAATTTCCAGAAACGTATAGATGCAATGGTTTTACGTTT
ACCAATTTTTGGTCAAATTGTCCGTAAAGCAACTATTGCTCGCTGGGCTCGTACCACTTCCACCTTGTTTGCAGCAGGCG
TACCTTTGGTAGAAGTTTTAGATTCAGTAGCAGGTGCAGCCGGTAATATCCTTTATGAGGAGGCAACACAGGACATTCGT
GCGAAAGTTACTCAAGGTCTTTCTTTGACTTCGAGTATGCAAAGTACGGATATGTTCCCCAATATGGTTATTCAAATGGC
CGCTATTGGTGAAGAATCCGGTTCCCTTGATGATATGCTGAATAAGGCTGCTGAATTTTACGAGGATGAAGTTGATAACT
CTGTAGCACAATTATCCTCACTGATGGAGCCCATCATTATGGTAGTTTTAGGCTCCATCATCGGAACATTGTTGGTAGCA
ATGTATCTGCCGCTGTTTAACCTCGGTAACGTAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M3E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

70.69

98.305

0.695
  pilG Neisseria gonorrhoeae MS11

70.968

97.579

0.692
  pilC Legionella pneumophila strain ERS1305867

45.679

98.063

0.448
  pilC Acinetobacter baumannii D1279779

45.226

96.368

0.436
  pilC Pseudomonas stutzeri DSM 10701

43.951

98.063

0.431
  pilC Acinetobacter baylyi ADP1

44.472

96.368

0.429
  pilC Vibrio cholerae strain A1552

38.5

96.852

0.373
  pilC Vibrio campbellii strain DS40M4

37.25

96.852

0.361