Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   H3L96_RS01965 Genome accession   NZ_CP059565
Coordinates   392899..394146 (-) Length   415 a.a.
NCBI ID   WP_009117619.1    Uniprot ID   G4CTR9
Organism   Neisseria wadsworthii strain DSM 22245     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387899..399146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS01940 (H3L96_01930) - 388729..390150 (-) 1422 WP_050795395.1 chloride channel protein -
  H3L96_RS01945 (H3L96_01935) - 390479..391054 (-) 576 WP_009117615.1 hypothetical protein -
  H3L96_RS01950 (H3L96_01940) yacG 391082..391264 (-) 183 WP_009117616.1 DNA gyrase inhibitor YacG -
  H3L96_RS01955 (H3L96_01945) coaE 391414..392037 (-) 624 WP_009117617.1 dephospho-CoA kinase -
  H3L96_RS01960 (H3L96_01950) pilD 392034..392912 (-) 879 WP_009117618.1 A24 family peptidase Machinery gene
  H3L96_RS01965 (H3L96_01955) pilG 392899..394146 (-) 1248 WP_009117619.1 type II secretion system F family protein Machinery gene
  H3L96_RS01970 (H3L96_01960) pilF 394188..395870 (-) 1683 WP_009117620.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H3L96_RS01975 (H3L96_01965) - 396221..397318 (+) 1098 WP_182073234.1 conjugal transfer protein -
  H3L96_RS01980 (H3L96_01970) - 397341..397811 (+) 471 WP_107688794.1 low molecular weight protein-tyrosine-phosphatase -
  H3L96_RS01985 (H3L96_01975) - 397882..398406 (-) 525 WP_182073235.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45521.61 Da        Isoelectric Point: 10.0471

>NTDB_id=470693 H3L96_RS01965 WP_009117619.1 392899..394146(-) (pilG) [Neisseria wadsworthii strain DSM 22245]
MASNQNTGGLFSVGTKDKGRRFTFEGKNTLTDQIVRGEVVAKDEEEARKKLQRRNIKPLRISKVKSTRKKKITQADITVF
TRQLATMMKAGLPVMQAFEIVARGHSNPSMTQLLMQVRGDVEQGSPMSKAFAKHPKYFDRFYCNLIAAGETGGVLEGLLD
KLALYKEKTQAIKKKVKSALTYPIAIVVVAIVLVMVMMMFVLPEFGKVYEGMGAELPGLTQVMMTISRFFVEWGWLIIIV
MIGSVIAAVKAVQNSPGLQRRVDAWLLRLPIFGNIVRKATIARWARTTSSLFAAGVPLVEALDSVAGAAGNILYEEATQD
IRAKVNQGMSLTSSMQSTELFPNMVLQMASIGEEAGSLEDMLNKAAEFYEDEVDNAVAQLSSLMEPIIMVVLGSIIGVIL
VAMYLPLFNLGNVVG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=470693 H3L96_RS01965 WP_009117619.1 392899..394146(-) (pilG) [Neisseria wadsworthii strain DSM 22245]
ATGGCATCAAATCAAAATACGGGTGGTCTTTTCAGCGTTGGCACTAAAGACAAAGGTAGACGTTTTACGTTTGAGGGCAA
AAATACGCTGACCGACCAAATCGTTCGCGGCGAAGTGGTTGCCAAAGACGAGGAAGAAGCACGCAAAAAATTGCAGCGTC
GCAATATTAAACCTTTGCGGATCAGTAAAGTAAAAAGTACTCGCAAGAAAAAAATTACGCAGGCGGATATTACGGTGTTT
ACCCGCCAGCTAGCTACGATGATGAAAGCAGGCCTGCCAGTAATGCAGGCATTTGAGATTGTTGCACGTGGCCATTCAAA
CCCTTCGATGACACAACTGTTAATGCAGGTTCGCGGTGATGTGGAGCAAGGTAGCCCGATGTCGAAGGCTTTTGCCAAAC
ATCCTAAATACTTCGACCGTTTTTACTGCAATCTGATTGCCGCCGGTGAAACAGGCGGGGTGCTGGAGGGCTTGTTGGAT
AAACTGGCGCTTTATAAAGAAAAGACACAAGCCATTAAAAAGAAAGTAAAAAGTGCATTGACTTATCCGATTGCCATTGT
GGTGGTTGCCATTGTTTTGGTAATGGTGATGATGATGTTTGTATTGCCCGAGTTTGGTAAGGTATATGAAGGTATGGGCG
CAGAATTGCCCGGGCTGACTCAAGTGATGATGACCATTTCCCGTTTCTTTGTAGAGTGGGGTTGGTTAATTATTATTGTG
ATGATTGGATCCGTAATTGCTGCAGTCAAAGCCGTGCAAAACTCACCCGGCTTGCAACGTCGTGTAGATGCGTGGTTATT
ACGCCTGCCGATTTTCGGCAATATTGTCAGAAAGGCAACGATTGCACGTTGGGCGAGGACGACTTCCAGTTTGTTTGCAG
CAGGTGTTCCCTTGGTGGAGGCTCTTGATTCAGTTGCGGGGGCTGCAGGTAATATTTTGTATGAAGAAGCAACACAAGAC
ATTCGTGCAAAAGTGAACCAAGGTATGTCGCTGACATCCAGTATGCAAAGTACGGAGCTTTTTCCGAACATGGTATTGCA
AATGGCTTCTATCGGTGAAGAAGCCGGCTCTTTGGAAGATATGTTGAATAAAGCGGCGGAATTTTACGAAGATGAAGTGG
ATAATGCCGTTGCGCAGTTATCTTCATTGATGGAACCAATCATTATGGTGGTGTTGGGTTCTATTATTGGTGTGATTCTG
GTTGCCATGTATCTGCCCTTGTTCAATCTGGGTAATGTTGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CTR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

67.874

99.759

0.677
  pilG Neisseria meningitidis 44/76-A

67.391

99.759

0.672
  pilC Legionella pneumophila strain ERS1305867

46.851

95.663

0.448
  pilC Acinetobacter baumannii D1279779

44.221

95.904

0.424
  pilC Pseudomonas stutzeri DSM 10701

43.89

96.627

0.424
  pilC Acinetobacter baylyi ADP1

43.609

96.145

0.419
  pilC Vibrio cholerae strain A1552

38.404

96.627

0.371
  pilC Vibrio campbellii strain DS40M4

38.5

96.386

0.371