Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H2788_RS17150 Genome accession   NZ_CP059550
Coordinates   3599713..3600939 (+) Length   408 a.a.
NCBI ID   WP_151740587.1    Uniprot ID   A0A7H2Q0B4
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594713..3605939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS17115 (H2788_17020) rimP 3595385..3595909 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  H2788_RS17135 (H2788_17040) secG 3596547..3596876 (-) 330 WP_306217788.1 preprotein translocase subunit SecG -
  H2788_RS17140 (H2788_17045) tpiA 3596889..3597683 (-) 795 WP_049064232.1 triose-phosphate isomerase -
  H2788_RS17145 (H2788_17050) pilB 3597973..3599685 (+) 1713 WP_347016649.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H2788_RS17150 (H2788_17055) pilC 3599713..3600939 (+) 1227 WP_151740587.1 type II secretion system F family protein Machinery gene
  H2788_RS17155 (H2788_17060) pilD 3600939..3601799 (+) 861 WP_174735321.1 A24 family peptidase Machinery gene
  H2788_RS17160 (H2788_17065) coaE 3601801..3602397 (+) 597 WP_068935797.1 dephospho-CoA kinase -
  H2788_RS17165 (H2788_17070) - 3602394..3603308 (-) 915 WP_347016650.1 DMT family transporter -
  H2788_RS17170 (H2788_17075) rlmB 3603343..3604092 (-) 750 WP_019456777.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H2788_RS17175 (H2788_17080) - 3604195..3604521 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  H2788_RS17180 - 3604598..3605033 (-) 436 Protein_3356 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45021.62 Da        Isoelectric Point: 10.0287

>NTDB_id=470551 H2788_RS17150 WP_151740587.1 3599713..3600939(+) (pilC) [Acinetobacter seifertii strain E-022166]
MAVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVILRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLIESGEQSGALETMLDRVAIYK
EKSELLKQKIRKAMKYPATVIVVAIVVTIILMIKVVPVFQDLFSSFGAKLPAFTQMVVDMSKWMQSYWFIMIIGIGGIIV
AFLEAKKRSKKFRDGLDKLILKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=470551 H2788_RS17150 WP_151740587.1 3599713..3600939(+) (pilC) [Acinetobacter seifertii strain E-022166]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAAGGCATAAAAATTAAGGGAGA
ACTGCCAGCTAAAAATATGGCTTTAGCTAAAGTGATCTTACGCAAACAAGGTGTCACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCTGAAGGCTTAGAAAATCCAGCAATGCGAGAGGT
GGTACTTGGTATTAAAGGTGAAGTTGAAGGTGGCAGCACTTTTGCCTCAGCTTTAAGAAAGTATCCTCAACATTTTGACA
ACTTGTTTTGTTCACTTATTGAATCTGGTGAGCAGTCAGGTGCCCTTGAAACCATGCTTGACCGTGTAGCAATTTACAAA
GAAAAAAGTGAATTGTTAAAGCAGAAGATAAGGAAAGCAATGAAATACCCCGCAACGGTTATTGTCGTAGCAATTGTAGT
GACTATTATTTTGATGATTAAAGTTGTACCCGTTTTCCAAGATCTATTTTCTTCATTCGGAGCAAAGTTACCAGCCTTTA
CGCAAATGGTTGTAGACATGTCAAAATGGATGCAATCATACTGGTTCATCATGATTATTGGGATTGGTGGCATTATTGTC
GCCTTTCTGGAGGCAAAAAAACGTAGTAAAAAGTTTCGGGATGGTTTAGATAAGTTGATACTTAAATTACCTATTTTCGG
AGACTTAGTTTATAAGGCAATTATTGCCCGTTATAGCCGTACCCTTGCCACAACATTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTAGAATCGACTGCAGGCGCAACAAACAATGTTATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACTGGTCAACAGCTTCAGTTTGCTATGCGAGTATCTAATCGTTTTCCATCGATGGCTATACAAATGGTAGCAATTGGCGA
AGAATCTGGTGCACTAGACAGCATGCTAGATAAAGTTGCGACCTATTATGAAAATGAAGTGGATAATGCGGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCTGTTTTAGGGGTACTGGTAGGCGGTCTAGTAGTTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2Q0B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

95.343

100

0.953
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.199

98.775

0.397