Detailed information NTG0470552

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H2788_RS17155
• Genome accession: NZ_CP059550
• Coordinates: 3600939..3601799 (+)
• Length: 286 a.a.
• NCBI ID: WP_174735321.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain E-022166
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3595939..3606799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2788_RS17135 (H2788_17040)	secG	3596547..3596876 (-)	330	WP_306217788.1	preprotein translocase subunit SecG	-
H2788_RS17140 (H2788_17045)	tpiA	3596889..3597683 (-)	795	WP_049064232.1	triose-phosphate isomerase	-
H2788_RS17145 (H2788_17050)	pilB	3597973..3599685 (+)	1713	WP_347016649.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H2788_RS17150 (H2788_17055)	pilC	3599713..3600939 (+)	1227	WP_151740587.1	type II secretion system F family protein	Machinery gene
H2788_RS17155 (H2788_17060)	pilD	3600939..3601799 (+)	861	WP_174735321.1	A24 family peptidase	Machinery gene
H2788_RS17160 (H2788_17065)	coaE	3601801..3602397 (+)	597	WP_068935797.1	dephospho-CoA kinase	-
H2788_RS17165 (H2788_17070)	-	3602394..3603308 (-)	915	WP_347016650.1	DMT family transporter	-
H2788_RS17170 (H2788_17075)	rlmB	3603343..3604092 (-)	750	WP_019456777.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H2788_RS17175 (H2788_17080)	-	3604195..3604521 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H2788_RS17180	-	3604598..3605033 (-)	436	Protein_3356	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32014.37 Da
• Isoelectric Point: 6.4568

>NTDB_id=470552 H2788_RS17155 WP_174735321.1 3600939..3601799(+) (pilD) [Acinetobacter seifertii strain E-022166]
MQDIIAYFIQNLTALYVAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSEPASSCPACHQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVLVFGPTIQMLLGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=470552 H2788_RS17155 WP_174735321.1 3600939..3601799(+) (pilD) [Acinetobacter seifertii strain E-022166]
ATGCAAGACATCATTGCTTATTTTATTCAAAACCTAACTGCACTTTATGTTGCGGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTGAATGTAGTGATTTATCGGACTCCAAAAATGATGGAGCAAGACTGGCAACAAGAATGTCAAATGCTCCTCA
ATCCAGAGCAACCGATTATTGACCATGAAAAACTGACATTAAGCGAACCTGCGTCCTCATGCCCCGCATGTCATCAACCG
ATTCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGCTAAGAGGAAAATGTGGTCATTGCCAGCATCCGATTAG
CATTCGTTATCCAGCAATTGAACTACTCACCATGTTATGTTCATTGGTGGTGGTTCTGGTGTTTGGCCCGACCATACAAA
TGCTTTTGGGTCTCGTCCTGACTTGGGTCCTGATTGCCCTCACCTTTATAGACTTTGATACACAACTTTTACCTGATCGC
TTTACCCTGCCTTTGGCAGCACTTGGCTTGGGCATTAACACCTTTAATATTTATACCTCACCTAACTCAGCTATTTGGGG
TTATTTAATCGGCTTTTTATGTCTCTGGATTGTGTATTACTTATTTAAAGTGATTACAGGTAAAGAAGGTATGGGCTATG
GCGACTTTAAGTTACTTGCAGCATTGGGCGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGTTATTGTCGTCTTTA
TTGGGTGCAATCATTGGCATCATTTTATTAAAGTTAAGAAATGAAAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	97.552	100	0.976
pilD	Acinetobacter baumannii D1279779	97.203	100	0.972
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	53.137	94.755	0.504
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437