Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HZY77_RS14345 Genome accession   NZ_CP059257
Coordinates   2912463..2913683 (+) Length   406 a.a.
NCBI ID   WP_296816175.1    Uniprot ID   -
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2907463..2918683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS14330 (HZY77_14180) ccsA 2908570..2909325 (+) 756 WP_296816165.1 cytochrome c biogenesis protein CcsA -
  HZY77_RS14335 (HZY77_14185) - 2909337..2910635 (+) 1299 WP_296816168.1 HlyC/CorC family transporter -
  HZY77_RS14340 (HZY77_14190) pilB 2910735..2912450 (+) 1716 WP_296816171.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZY77_RS14345 (HZY77_14195) pilC 2912463..2913683 (+) 1221 WP_296816175.1 type II secretion system F family protein Machinery gene
  HZY77_RS14350 (HZY77_14200) pilD 2913683..2914534 (+) 852 WP_296816177.1 A24 family peptidase Machinery gene
  HZY77_RS14355 (HZY77_14205) coaE 2914534..2915142 (+) 609 WP_296816180.1 dephospho-CoA kinase -
  HZY77_RS14360 (HZY77_14210) zapD 2915195..2915950 (+) 756 WP_296816183.1 cell division protein ZapD -
  HZY77_RS14365 (HZY77_14215) - 2915947..2916141 (+) 195 WP_296816186.1 DNA gyrase inhibitor YacG -
  HZY77_RS14370 (HZY77_14220) rpiA 2916145..2916800 (-) 656 Protein_2841 ribose-5-phosphate isomerase RpiA -
  HZY77_RS14375 (HZY77_14225) ilvA 2916879..2918396 (+) 1518 WP_296816189.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44048.72 Da        Isoelectric Point: 10.0334

>NTDB_id=468186 HZY77_RS14345 WP_296816175.1 2912463..2913683(+) (pilC) [MAG: Thiobacillus sp. isolate SSC5]
MATAAKAVKDATFLWEGMDKRGKKVKGQMQAGGEAVVNSQLRKQGITVTKVKKQSALFSGAKKITDKDVTLFTRQLATMM
KAGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLTQAXRTPPLYFDALFCNLVGAGESAGILEGVLDRLAIYKEK
ILAIKSKIKSALFYPVSIIVVAFVITAIIMIFVIPAFKELFSSFGADLPGPTLVVMAISDYFVKWWWAIFGVIGGGLXCF
FQAWRRSRKVQMFMDRLVLKLPIFGPVIEKATIARWTRTLATMFAAGVPLVEALESVGGASGNQVFVEATHKIRGEVATG
TALTVAMQNSGRFPNMVLQMAAIGEESGSLDSMLGKVADFYEAEVDDAVEALSSLMEPIIMVVLGTLIGGMVIAMYLPIF
KMGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=468186 HZY77_RS14345 WP_296816175.1 2912463..2913683(+) (pilC) [MAG: Thiobacillus sp. isolate SSC5]
ATGGCTACAGCGGCAAAAGCAGTCAAGGACGCCACCTTCCTGTGGGAAGGGATGGACAAGCGCGGCAAGAAGGTCAAGGG
CCAGATGCAGGCCGGCGGCGAGGCCGTGGTCAATTCCCAGTTGCGCAAGCAGGGCATTACCGTCACCAAGGTCAAGAAGC
AGAGTGCCCTGTTCAGCGGCGCCAAGAAAATCACCGACAAGGATGTCACGCTGTTCACCCGTCAACTGGCCACCATGATG
AAGGCAGGCGTACCTTTGCTGCAATCCTTCGAAATCGTGGCGCGCGGGCACTCCAATCCTTCGATGCAGCGCCTGCTGAT
GGAAATCAAGGCGGACATCGAAAAGGGCAGCAGCCTGACGCAGGCGTTNCGGACGCCACCCCTGTATTTCGACGCGCTGT
TCTGCAACCTGGTCGGAGCGGGCGAGTCGGCCGGTATTCTCGAAGGCGTACTCGACCGTCTCGCGATCTACAAGGAAAAG
ATTCTTGCCATCAAGAGCAAGATCAAATCGGCTCTGTTCTACCCGGTATCCATCATTGTGGTGGCGTTTGTCATCACGGC
CATCATCATGATTTTTGTGATTCCCGCGTTCAAGGAACTGTTCAGCAGTTTTGGTGCAGATCTGCCGGGGCCGACCCTGG
TGGTCATGGCAATATCGGACTATTTTGTCAAATGGTGGTGGGCAATTTTCGGTGTGATCGGCGGCGGGCTGTANTGCTTT
TTCCAGGCATGGAGACGTTCGCGCAAGGTACAGATGTTCATGGATCGCCTTGTACTCAAGCTGCCGATTTTCGGACCGGT
CATCGAGAAGGCCACCATCGCGCGCTGGACGCGCACGCTGGCAACCATGTTTGCGGCGGGCGTGCCGCTGGTCGAAGCCT
TGGAATCGGTCGGTGGCGCGTCGGGTAACCAGGTATTTGTGGAGGCCACCCATAAAATCCGCGGAGAAGTGGCGACCGGT
ACGGCATTGACCGTGGCGATGCAGAATTCCGGACGTTTTCCCAACATGGTGCTGCAGATGGCAGCCATCGGTGAGGAATC
CGGCTCGCTCGATTCCATGCTGGGCAAGGTAGCCGATTTTTACGAAGCCGAGGTCGACGACGCGGTCGAAGCGTTGTCGA
GCCTGATGGAGCCGATCATCATGGTGGTGCTGGGTACCCTTATCGGTGGCATGGTGATCGCCATGTACCTGCCGATCTTC
AAGATGGGCCAGGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

53.808

100

0.539
  pilC Legionella pneumophila strain ERS1305867

54.408

97.783

0.532
  pilC Pseudomonas stutzeri DSM 10701

52.475

99.507

0.522
  pilG Neisseria gonorrhoeae MS11

51.98

99.507

0.517
  pilC Acinetobacter baylyi ADP1

52.645

97.783

0.515
  pilG Neisseria meningitidis 44/76-A

51.485

99.507

0.512
  pilC Vibrio cholerae strain A1552

40.75

98.522

0.401
  pilC Vibrio campbellii strain DS40M4

38.647

100

0.394