Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HZY77_RS14350 Genome accession   NZ_CP059257
Coordinates   2913683..2914534 (+) Length   283 a.a.
NCBI ID   WP_296816177.1    Uniprot ID   -
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2908683..2919534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS14335 (HZY77_14185) - 2909337..2910635 (+) 1299 WP_296816168.1 HlyC/CorC family transporter -
  HZY77_RS14340 (HZY77_14190) pilB 2910735..2912450 (+) 1716 WP_296816171.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZY77_RS14345 (HZY77_14195) pilC 2912463..2913683 (+) 1221 WP_296816175.1 type II secretion system F family protein Machinery gene
  HZY77_RS14350 (HZY77_14200) pilD 2913683..2914534 (+) 852 WP_296816177.1 A24 family peptidase Machinery gene
  HZY77_RS14355 (HZY77_14205) coaE 2914534..2915142 (+) 609 WP_296816180.1 dephospho-CoA kinase -
  HZY77_RS14360 (HZY77_14210) zapD 2915195..2915950 (+) 756 WP_296816183.1 cell division protein ZapD -
  HZY77_RS14365 (HZY77_14215) - 2915947..2916141 (+) 195 WP_296816186.1 DNA gyrase inhibitor YacG -
  HZY77_RS14370 (HZY77_14220) rpiA 2916145..2916800 (-) 656 Protein_2841 ribose-5-phosphate isomerase RpiA -
  HZY77_RS14375 (HZY77_14225) ilvA 2916879..2918396 (+) 1518 WP_296816189.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30662.20 Da        Isoelectric Point: 6.6248

>NTDB_id=468187 HZY77_RS14350 WP_296816177.1 2913683..2914534(+) (pilD) [MAG: Thiobacillus sp. isolate SSC5]
MDMLHAEPALFTGLVFLFGLLVGSFLNVVIHRLPKMMEAEWRTQCAELHGEPLPEVPRYNLWLPRSACTQCGHQITALEN
IPLLSWLWLRGRCSACSTPISARYPLVELLTALLSAAVAWKWGASVQTAGALLLVWVLIALAFIDLDTTLLPDSLTLPLV
WLGLLFNLNGAFASLPDAVVGAMAGYGVLWSVYWLFKLATGKEGMGFGDFKLLAAIGAWLGWQMLPVTLLLSSVVGAAIG
VAMIVLVKHDRRVPIPFGPYLAGGGLVALXFGADLTQAYLAQF

Nucleotide


Download         Length: 852 bp        

>NTDB_id=468187 HZY77_RS14350 WP_296816177.1 2913683..2914534(+) (pilD) [MAG: Thiobacillus sp. isolate SSC5]
ATGGATATGCTGCATGCTGAACCAGCCCTCTTCACCGGGCTGGTNTTTTTATTTGGGCTGCTGGTGGGCAGTTTCCTCAA
TGTCGTCATCCATCGGCTACCTAAAATGATGGAGGCCGAGTGGCGGACGCAATGCGCAGAATTGCATGGCGAGCCCTTGC
CTGAAGTCCCTCGCTATAACCTGTGGCTACCGCGCTCGGCCTGTACCCAGTGTGGACATCAGATCACTGCGTTGGAGAAT
ATTCCGCTGTTGTCGTGGCTGTGGCTACGCGGTCGGTGCTCGGCCTGCAGTACGCCTATCAGTGCGCGCTACCCGCTGGT
GGAACTGCTTACCGCGTTGCTGTCGGCGGCAGTCGCCTGGAAATGGGGTGCCAGCGTGCAGACAGCGGGTGCGCTGCTTC
TGGTATGGGTGCTGATCGCGCTGGCCTTCATTGATCTCGATACCACTCTGCTGCCGGACAGTCTCACCTTGCCGCTTGTA
TGGCTGGGCTTGCTGTTCAACCTGAACGGGGCTTTCGCCAGCCTGCCGGATGCGGTGGTCGGCGCCATGGCCGGTTACGG
AGTGCTGTGGTCGGTGTACTGGCTGTTCAAACTGGCAACCGGCAAGGAGGGTATGGGGTTCGGCGACTTCAAGCTGCTTG
CGGCCATCGGCGCGTGGCTCGGCTGGCAGATGCTGCCCGTCACGTTGCTGCTGTCGTCGGTGGTCGGTGCGGCGATCGGC
GTGGCGATGATCGTGCTGGTCAAGCATGACCGTCGCGTGCCGATCCCCTTCGGTCCGTACCTGGCTGGCGGCGGCCTGGT
GGCGCTGTTNTTTGGCGCCGACTTGACGCAGGCCTATCTCGCACAATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(132-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.986

100

0.562
  pilD Vibrio campbellii strain DS40M4

55.439

100

0.558
  pilD Acinetobacter baumannii D1279779

49.814

95.053

0.473
  pilD Acinetobacter nosocomialis M2

49.442

95.053

0.47
  pilD Neisseria gonorrhoeae MS11

51.793

88.693

0.459