Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H0S56_RS01550 Genome accession   NZ_CP059081
Coordinates   344567..346720 (+) Length   717 a.a.
NCBI ID   WP_195725505.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339567..351720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01530 (H0S56_01530) pilM 341607..342665 (+) 1059 WP_195725502.1 pilus assembly protein PilM Machinery gene
  H0S56_RS01535 (H0S56_01535) comN 342665..343303 (+) 639 WP_195725503.1 PilN domain-containing protein Machinery gene
  H0S56_RS01540 (H0S56_01540) comO 343300..344022 (+) 723 WP_195725504.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S56_RS01545 (H0S56_01545) pilP 344022..344549 (+) 528 WP_005108515.1 pilus assembly protein PilP Machinery gene
  H0S56_RS01550 (H0S56_01550) pilQ 344567..346720 (+) 2154 WP_195725505.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S56_RS01555 (H0S56_01555) aroK 346757..347293 (+) 537 WP_005101380.1 shikimate kinase AroK -
  H0S56_RS01560 (H0S56_01560) aroB 347322..348401 (+) 1080 WP_195725506.1 3-dehydroquinate synthase -
  H0S56_RS01565 (H0S56_01565) - 348412..349290 (+) 879 WP_195725507.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 77722.98 Da        Isoelectric Point: 5.2363

>NTDB_id=467120 H0S56_RS01550 WP_195725505.1 344567..346720(+) (pilQ) [Acinetobacter lwoffii strain 12CE1]
MNKSIKEFVFGDANTMNRVFRQFSMGAVAIAVMQAASAQVSMTNIVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSISVATREASSVDVTSDAQRARLTVNLTEAGAFTTRVEGNTFILKINSATPVTIAQPVQQQSAQGIS
NIGFQRGAQGEGQVVIDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSG
GSSSTNNNEGGESLLSSRGSVSVDARTNTIIVNDTQLFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGLL
SQGITDNNHLLVGGSDTTLWDLKTPDDDGKYTIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADGYGEV
ISTPKVLTADKQKATVASGSQIPYQSAEGGGTNAVSTTAFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLT
INKNQITTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=467120 H0S56_RS01550 WP_195725505.1 344567..346720(+) (pilQ) [Acinetobacter lwoffii strain 12CE1]
ATGAATAAGAGTATTAAAGAATTTGTTTTTGGGGATGCTAATACAATGAATCGTGTGTTTCGTCAGTTTTCAATGGGTGC
TGTTGCGATTGCGGTGATGCAAGCGGCCAGTGCGCAGGTTTCAATGACCAATATAGTACCTATGCAGCTTCCTGGGCAAG
GAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCACAAGCCTACCAATTAGAATCACCGTCACGTTTGATT
CTGGACTTTGACAAGGCACAACAGAATTTAAAACAAAGCAGTATTTCGGTGGCAACACGTGAAGCCAGTTCGGTAGATGT
CACTTCGGATGCTCAGCGGGCACGTCTGACGGTAAATCTGACCGAGGCTGGAGCCTTTACGACTCGTGTAGAAGGTAATA
CCTTTATTCTTAAAATTAACTCAGCAACTCCTGTAACTATAGCTCAACCTGTACAGCAACAGTCAGCTCAGGGGATTAGC
AACATTGGTTTCCAGCGCGGTGCTCAAGGTGAAGGCCAGGTCGTTATTGATCTGTTAGGAAATAATACTCCTGTTGATGT
ACAGCAGCAGGGTACCAAAGTTATTGTGCGCACTTTAGGTTCCAAGATTCCGGCTCATTTGACCCGCCGTCTTAATGTGA
CTGATTTCGCGACTCCGGTATCCAGTGTCGATGCCGTGAATCAAAATGGTTCAGGAGTCATTACGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTACCAGACTGATAATAAGCTAACCATCAGTTTGAAACGTCCGGAAGCCAAGAGTCCATTACG
TCCTAAAACTGTGGCGTATACTGGCAAGAAAATCTCTTTGGATTTTCAGGATATCGAAGTCCGTCGTGTTTTACAGCTCT
TAGCCGATTTCACTGATATCAATATGGTGGCCGCAGATAGTGTACAAGGTAATATTACCTTGCGTTTAAAAGAAGTGCCT
TGGGATCAGGCGCTGGATATTGTGCTGAAAACCAAAAATCTGGATAAACGCCGCAATGGCAATGTGATCTGGATCGCACC
AGTTACAGAGCTGATAAAGGCTGAAGAAGAAGAAGCTAAGGCGATTAAGCAGAGTGTTGCACTTGCCCCTATCCAAACTG
AATATATGCAGCTCAGTTATGCCAAAGCGGCAGATATTGAGAAACTGATTACGCAGAATAAAGGCGCATCTAGTTCAGGC
GGCTCGAGTAGCACGAATAATAATGAGGGTGGGGAAAGTTTATTAAGTTCCCGTGGTTCTGTGTCTGTTGATGCACGAAC
CAATACCATTATTGTGAATGATACCCAGCTCTTTATTGACAAAATCCGTAATATGGTGGATCTGCTTGATGTGCAGGTGA
AGCAGGTCATGGTGGAAGCTCGTATTGTGCGTGCAACGACTGATTTCACCAAAGAGATGGGGGTGAAATGGGGGCTTCTG
TCTCAAGGTATAACTGATAATAATCATTTATTGGTAGGTGGTAGTGATACTACATTATGGGATTTAAAAACACCTGATGA
TGATGGTAAGTATACGATTCAACGACCGGATAATCTTAATGTGGACTTGGGCGTTACTAGTCAGGGTGCAAGCCGTATTG
CCTTTGGTTTAATCAGTCTCTCTGATTTTATGCTTGATCTTGAGCTTTCTGCACTTCAGGCAGATGGTTATGGCGAGGTG
ATTTCTACCCCTAAAGTACTGACTGCGGATAAGCAAAAAGCGACTGTGGCTTCGGGCTCACAAATTCCGTATCAATCTGC
TGAAGGCGGGGGTACTAATGCCGTGTCGACTACAGCATTTATTGATGCGACTTTAAGTCTGGATGTCACGCCAAGCATTA
CCCCAGATGGTAAAGTACAGATGGAACTCAATATTACCAGTGACTCACCAGGGAACCCGACACCGACTGGACAGCTTACT
ATTAACAAAAACCAGATCACTACCAATGTCTTGGTCGATAATGGTGAAACAGTGGTTCTAGGTGGTATTTTTGAGCAAGA
AACCCGTAATGCACAAACCAAGGTACCATTCCTGGGGGATATTCCTTATGTAGGGCGTTTATTCCGTAAAGATTTAAAGT
CTGATAATAAACGTGAGCTACTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

Bacterial type II and III secretion system protein (Secretin)

(551-709)

Secretin and TonB N terminus short domain (STN)

(305-347)

AMIN domain (AMIN)

(55-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.757

100

0.745
  pilQ Acinetobacter baumannii strain A118

73.619

100

0.743
  comQ Acinetobacter baylyi ADP1

70.927

99.303

0.704
  pilQ Pseudomonas aeruginosa PAK

42.203

97.49

0.411
  pilQ Legionella pneumophila strain Lp02

37.358

98.187

0.367
  pilQ Legionella pneumophila strain ERS1305867

37.393

97.35

0.364