Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   H0S56_RS01535 Genome accession   NZ_CP059081
Coordinates   342665..343303 (+) Length   212 a.a.
NCBI ID   WP_195725503.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337665..348303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01525 (H0S56_01525) ponA 338916..341441 (-) 2526 WP_195725501.1 penicillin-binding protein PBP1a -
  H0S56_RS01530 (H0S56_01530) pilM 341607..342665 (+) 1059 WP_195725502.1 pilus assembly protein PilM Machinery gene
  H0S56_RS01535 (H0S56_01535) comN 342665..343303 (+) 639 WP_195725503.1 PilN domain-containing protein Machinery gene
  H0S56_RS01540 (H0S56_01540) comO 343300..344022 (+) 723 WP_195725504.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S56_RS01545 (H0S56_01545) pilP 344022..344549 (+) 528 WP_005108515.1 pilus assembly protein PilP Machinery gene
  H0S56_RS01550 (H0S56_01550) pilQ 344567..346720 (+) 2154 WP_195725505.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S56_RS01555 (H0S56_01555) aroK 346757..347293 (+) 537 WP_005101380.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23912.08 Da        Isoelectric Point: 4.6946

>NTDB_id=467117 H0S56_RS01535 WP_195725503.1 342665..343303(+) (comN) [Acinetobacter lwoffii strain 12CE1]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMELIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRIGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=467117 H0S56_RS01535 WP_195725503.1 342665..343303(+) (comN) [Acinetobacter lwoffii strain 12CE1]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTGGCAATCTGCGTGGG
GGCGCTTTTCTTGGGATTAGCGGCAGCAGGTTCAACCTGGTTTTATTATGATCACAAACTTCAGGATCAGGAGCAGGCCA
ATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAAGGTTTGCAAGAGCAGCGTAATGCG
ATTGTTGAACGGATGGAACTGATTCAGGGTCTACAAACTCAGCGTCCGATTGCGGTACATTTGATTGATGAAATTGTACG
GGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTATCGGTGACAAGTTTACTATTGAAGGTCGAGCTGAGAGTC
CAAATACGGTCGCAGAACTGCTCCGTAATCTGGAAGCTTCATCTTGGTATCGAAATGCCTTTATGAACGCTTTCCTGGTG
GCTGAAGAAGCAAAAGAAAAGGCACCAAGCTCGATTATTCCACGTGTGGAAGAGTCTTATGGCAGTTTTACTGTGACGGT
AGATCTGGATCAGATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.507

98.585

0.656
  pilN Acinetobacter baumannii D1279779

70.466

91.038

0.642