Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H0S56_RS01545 Genome accession   NZ_CP059081
Coordinates   344022..344549 (+) Length   175 a.a.
NCBI ID   WP_005108515.1    Uniprot ID   N9FZC2
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339022..349549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01530 (H0S56_01530) pilM 341607..342665 (+) 1059 WP_195725502.1 pilus assembly protein PilM Machinery gene
  H0S56_RS01535 (H0S56_01535) comN 342665..343303 (+) 639 WP_195725503.1 PilN domain-containing protein Machinery gene
  H0S56_RS01540 (H0S56_01540) comO 343300..344022 (+) 723 WP_195725504.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S56_RS01545 (H0S56_01545) pilP 344022..344549 (+) 528 WP_005108515.1 pilus assembly protein PilP Machinery gene
  H0S56_RS01550 (H0S56_01550) pilQ 344567..346720 (+) 2154 WP_195725505.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S56_RS01555 (H0S56_01555) aroK 346757..347293 (+) 537 WP_005101380.1 shikimate kinase AroK -
  H0S56_RS01560 (H0S56_01560) aroB 347322..348401 (+) 1080 WP_195725506.1 3-dehydroquinate synthase -
  H0S56_RS01565 (H0S56_01565) - 348412..349290 (+) 879 WP_195725507.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19288.42 Da        Isoelectric Point: 7.1658

>NTDB_id=467119 H0S56_RS01545 WP_005108515.1 344022..344549(+) (pilP) [Acinetobacter lwoffii strain 12CE1]
MKNIKITSALTLGFLLVGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSMRNQAGQILALIQTPDGEVERIQRGSYMGLNHGRVVGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=467119 H0S56_RS01545 WP_005108515.1 344022..344549(+) (pilP) [Acinetobacter lwoffii strain 12CE1]
ATGAAGAATATTAAAATTACTTCGGCTTTAACGCTTGGGTTTTTGTTAGTGGGGTGTGATTCACGTATTGATGCCGTCAA
TCAGGAAATGGCCAACATCCGTAATCAGCCACCTTTGCCAATTGAACCGGCTCCTGATTTTATGCCAGTGGAAACTTTTA
ATTATGCAGCGCACCAAATCAAAAGTCCTTTTTTACCAAGCTCTTTGGCTGCTGAACTGAAAATTATGGCGGGGAAACGG
GTTTATCCAAACCTATCACGTCAACTACAACCGCTAGAAAGTTATCCGCTGGAAACGTTAACCATGAAAGGCAGTATGCG
CAATCAGGCAGGACAGATTCTGGCTTTAATCCAGACGCCTGATGGTGAGGTTGAGCGGATCCAACGTGGTAGCTATATGG
GACTTAATCATGGTCGTGTGGTTGGAATTACACCAACACAGATCGATTTGATTGAGATTATTCCCGATGGTCGTGAGGGA
TATGTGGAACGTCCGCGAAGTCTGGTTCTTATCGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FZC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.771
  comL Acinetobacter baylyi ADP1

72.189

96.571

0.697