Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H0S56_RS01325 Genome accession   NZ_CP059081
Coordinates   298263..299492 (-) Length   409 a.a.
NCBI ID   WP_195725486.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 293263..304492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01300 (H0S56_01300) - 294643..294966 (+) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -
  H0S56_RS01305 (H0S56_01305) rlmB 295101..295850 (+) 750 WP_005094401.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H0S56_RS01310 (H0S56_01310) - 295857..296780 (+) 924 WP_005094400.1 DMT family transporter -
  H0S56_RS01315 (H0S56_01315) coaE 296802..297401 (-) 600 WP_195725484.1 dephospho-CoA kinase -
  H0S56_RS14390 (H0S56_01320) pilD 297403..298263 (-) 861 WP_195725485.1 A24 family peptidase Machinery gene
  H0S56_RS01325 (H0S56_01325) pilC 298263..299492 (-) 1230 WP_195725486.1 type II secretion system F family protein Machinery gene
  H0S56_RS01330 (H0S56_01330) pilB 299524..301233 (-) 1710 WP_195725487.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H0S56_RS01335 (H0S56_01335) tpiA 301511..302302 (+) 792 WP_195725488.1 triose-phosphate isomerase -
  H0S56_RS01340 (H0S56_01340) secG 302316..302645 (+) 330 WP_005248398.1 preprotein translocase subunit SecG -
  H0S56_RS01370 (H0S56_01370) rimP 303603..304127 (+) 525 WP_004281103.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44866.42 Da        Isoelectric Point: 9.9256

>NTDB_id=467114 H0S56_RS01325 WP_195725486.1 298263..299492(-) (pilC) [Acinetobacter lwoffii strain 12CE1]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPAKNMALAKVTLRKQGISIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAII
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=467114 H0S56_RS01325 WP_195725486.1 298263..299492(-) (pilC) [Acinetobacter lwoffii strain 12CE1]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAAGGGGCAAAGATCAAGGG
GGAATTGCCAGCAAAAAATATGGCTTTGGCCAAGGTCACCCTTCGAAAACAAGGTATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAATATTCTCGAAGGCTTGATGAAGAAAAAAGTCTCGACACTGGATATTACGATTTTCACCCGACAGTTAGCG
ACCATGATGAAAGCCGGGGTACCCTTGGTACAAGGCTTTGAAATTGTTGCAGAGGGTCTGGAGAATCCAGCCATGCGTGA
AGTCGTTCTGGGGATTAAAGGTGAGGTGGAAGGTGGTAATACCTTTGCCGGTGCACTGCGTAAATACCCGCAATACTTCG
ATAAACTATTTTGTTCACTGGTGGAATCGGGTGAACAATCCGGTGCGCTAGAAACCATGCTGGATCGGGTCGCGATCTAC
AAGGAAAAAAGTGAACTGCTCAAGCAAAAAATTAAAAAAGCCATGAAGTACCCGGCTGCGGTGGTCGTGGTCGCGCTGAT
TGTCACGATTATTCTAATGGTAAAAGTGGTCCCGGTTTTCCAGGATTTATTCTCTTCATTTGGTGCTGACTTACCGGCTT
TTACCAAAATGGTAGTCAATATGTCGGAATGGATGCAAAAATATTGGTTCCTGCTGATTATTGCCATTGGGGCCATCATT
ACGGCTTTTCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTTCTGGATAAAGCAGCACTTAAAGCACCGATTTT
CGGTGATCTGGTGTATAAAGCCATTATTGCCCGTTATAGCCGTACCTTGGCCACCACTTTTGCAGCCGGTGTACCCTTGA
TTGATGCACTGGAATCCACTGCCGGCGCAACCAATAACGTGGTGTATGAAGATGCCGTGATGAAAATCCGCGAAGATGTT
GCCACTGGTCAACAACTACAGTTTGCTATGCGCGTGACTAACAAGTTTCCATCTATGGCCGTGCAAATGGTTGCCATTGG
TGAGGAATCCGGTGCGCTGGATGCCATGCTGGATAAAGTAGCCACGCATTATGAAAATGAAGTCGACAATGCCGTAGACG
GTCTCACCTCCATGATGGAGCCCTTGATCATGGCTGTTCTCGGTGTACTCGTCGGTGGTCTGGTGATTGCCATGTACCTT
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.926

99.511

0.895
  pilC Acinetobacter baylyi ADP1

83.047

99.511

0.826
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

53.904

97.066

0.523
  pilG Neisseria gonorrhoeae MS11

46.231

97.311

0.45
  pilG Neisseria meningitidis 44/76-A

46.231

97.311

0.45
  pilC Vibrio cholerae strain A1552

43.627

99.756

0.435
  pilC Vibrio campbellii strain DS40M4

41.814

97.066

0.406