NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H0S56_RS14390	Genome accession	NZ_CP059081
Coordinates	297403..298263 (-)	Length	286 a.a.
NCBI ID	WP_195725485.1	Uniprot ID	-
Organism	Acinetobacter lwoffii strain 12CE1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 292403..303263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0S56_RS01295 (H0S56_01295)	recN	292539..294200 (-)	1662	WP_195725483.1	DNA repair protein RecN	-
H0S56_RS01300 (H0S56_01300)	-	294643..294966 (+)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
H0S56_RS01305 (H0S56_01305)	rlmB	295101..295850 (+)	750	WP_005094401.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H0S56_RS01310 (H0S56_01310)	-	295857..296780 (+)	924	WP_005094400.1	DMT family transporter	-
H0S56_RS01315 (H0S56_01315)	coaE	296802..297401 (-)	600	WP_195725484.1	dephospho-CoA kinase	-
H0S56_RS14390 (H0S56_01320)	pilD	297403..298263 (-)	861	WP_195725485.1	A24 family peptidase	Machinery gene
H0S56_RS01325 (H0S56_01325)	pilC	298263..299492 (-)	1230	WP_195725486.1	type II secretion system F family protein	Machinery gene
H0S56_RS01330 (H0S56_01330)	pilB	299524..301233 (-)	1710	WP_195725487.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H0S56_RS01335 (H0S56_01335)	tpiA	301511..302302 (+)	792	WP_195725488.1	triose-phosphate isomerase	-
H0S56_RS01340 (H0S56_01340)	secG	302316..302645 (+)	330	WP_005248398.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32021.25 Da Isoelectric Point: 7.8044

                                >NTDB_id=467142 H0S56_RS14390 WP_195725485.1 297403..298263(-) (pilD) [Acinetobacter lwoffii strain 12CE1]

MQDLIQYFIQNPTALYSAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPIIDETKLSLSKPDSTCPKCHQP

IRWYQNIPVISWLVLRGKCGNCQNPISIRYPLIELLTAACALMVVAVFGPTVQMLFGLILTYVLIALTFIDFDTQLLPDR

YTLPLAALGLGVNSYALYTSPSAAIWGYIIGFLCLWVVYYVFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=467142 H0S56_RS14390 WP_195725485.1 297403..298263(-) (pilD) [Acinetobacter lwoffii strain 12CE1]

ATGCAAGATCTTATTCAATATTTCATTCAAAACCCAACAGCGCTGTATAGCGCAGTTGGGCTTTTTAGCCTCTGCATTGG

TAGTTTCTTAAATGTGGTGATTTATCGCACTCCCAAGATGATGGAGCAGGAATGGCGTACCGATTGCCAGATGTTCCTGC

ATCCGGAACAGCCAATTATTGATGAGACCAAATTAAGTTTAAGCAAACCCGATTCGACTTGCCCCAAATGTCATCAACCA

ATCCGCTGGTACCAGAATATTCCCGTCATCAGCTGGCTGGTCTTGCGCGGCAAGTGCGGCAACTGCCAGAATCCCATCAG

TATCCGCTATCCACTGATTGAGCTTCTGACCGCGGCCTGTGCGCTGATGGTGGTGGCTGTTTTTGGTCCGACTGTCCAGA

TGTTATTTGGCCTGATTCTGACTTATGTCTTAATTGCACTGACTTTTATTGATTTTGACACCCAGTTATTGCCGGACCGT

TATACCCTGCCCCTGGCCGCGCTGGGTCTGGGCGTCAATAGTTATGCCCTCTATACCTCACCGAGCGCTGCCATCTGGGG

CTATATCATTGGCTTTCTGTGTTTGTGGGTGGTCTATTATGTCTTTAAAATCGTCACTGGCAAGGAAGGTATGGGCTATG

GCGATTTTAAATTGCTTGCCGCCTTGGGTGCCTGGATGGGGCCTTTGCTATTACCATTAATTGTGCTCCTTTCTTCTTTA

GTGGGCGCGATTATCGGGATTATCCTGCTGAAAGTCCGTAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT

TGCCGGCTGGATTGCTTTTCTGTGGGGCGAGCAGATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	81.754	99.65	0.815
pilD	Acinetobacter baumannii D1279779	81.404	99.65	0.811
pilD	Vibrio cholerae strain A1552	55.805	93.357	0.521
pilD	Vibrio campbellii strain DS40M4	53.184	93.357	0.497
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448

Detailed information NTG0467142