Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H0S57_RS15405 Genome accession   NZ_CP059080
Coordinates   3174858..3176936 (-) Length   692 a.a.
NCBI ID   WP_195728318.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3169858..3181936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS15390 (H0S57_15395) - 3172324..3173163 (-) 840 WP_195728316.1 hypothetical protein -
  H0S57_RS15395 (H0S57_15400) aroB 3173171..3174256 (-) 1086 WP_195728317.1 3-dehydroquinate synthase -
  H0S57_RS15400 (H0S57_15405) - 3174287..3174769 (-) 483 WP_265088291.1 shikimate kinase -
  H0S57_RS15405 (H0S57_15410) pilQ 3174858..3176936 (-) 2079 WP_195728318.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S57_RS15410 (H0S57_15415) pilP 3176956..3177483 (-) 528 WP_195728319.1 pilus assembly protein PilP Machinery gene
  H0S57_RS15415 (H0S57_15420) pilO 3177483..3178205 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S57_RS15420 (H0S57_15425) pilN 3178202..3178858 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  H0S57_RS15425 (H0S57_15430) pilM 3178858..3179916 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75041.10 Da        Isoelectric Point: 5.1300

>NTDB_id=467100 H0S57_RS15405 WP_195728318.1 3174858..3176936(-) (pilQ) [Acinetobacter johnsonii strain E10B]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSVNPALATSVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTYSAESGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGTLTSAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=467100 H0S57_RS15405 WP_195728318.1 3174858..3176936(-) (pilQ) [Acinetobacter johnsonii strain E10B]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGCATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGTGAACCCAGCGCTAGCAACATCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCGCGCCGTCTCAATGTGA
ATGATTTCGCAACGCCTGTATCGACCATCGATGCACAAAACGATGGCAGTAACGGCCTGATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACGGGCAAAAAGATTTCTTTAGATTTCCAAGATATTGAAGTACGCCGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCGGACACGGTACAAGGCAATATTACCTTGCGCCTGAAGGATGTT
CCATGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCCCGTATTGTAACTGCACAAACAGATTTCTCTCGCGAATTGGGAATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGAGTAGATTTGGCAACGGG
TACGGCGGGAACGTTTAACTTTGGTTTGTTAAAAATCTCAGACTATATGTTGAATCTTGAGTTAACTGCGCTACAAGCAG
ATGGTCATGGTGAAGTTTTGTCGGCGCCTAAAGTACTTACTGGTGATAAACAGAAAGCCTATATTTTACGTGGAGATCAA
ATTCCTTACCAAACTTATAGTGCCGAGTCAGGGACAACAACCAGTTTTGTTGATGCGAATTTAAAGTTGGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGCTAAAAATTGAAAAAGATACAGTTGGTACACTAACATCAGCAGGGT
ATTTAATTAATACAAATGAACTTGAAACCAATGTTTTGGTGGATGATGGCGAGACGGTTGTATTGGGTGGTATTTTTGAT
GACATTAAGCAAAATCAATATGAGAAAGTTCCATTTTTTGGGGATTTACCTGTAGTGGGTGCTTTATTTAAAAATAACAC
CAAATCTAGTGCGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.742

100

0.685
  pilQ Acinetobacter baumannii strain A118

65.603

100

0.684
  comQ Acinetobacter baylyi ADP1

63.01

100

0.647
  pilQ Pseudomonas aeruginosa PAK

39.623

99.566

0.395
  pilQ Legionella pneumophila strain Lp02

37.736

99.566

0.376
  pilQ Legionella pneumophila strain ERS1305867

38.018

97.688

0.371