Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H0S57_RS15420 Genome accession   NZ_CP059080
Coordinates   3178202..3178858 (-) Length   218 a.a.
NCBI ID   WP_005401354.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3173202..3183858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS15400 (H0S57_15405) - 3174287..3174769 (-) 483 WP_265088291.1 shikimate kinase -
  H0S57_RS15405 (H0S57_15410) pilQ 3174858..3176936 (-) 2079 WP_195728318.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S57_RS15410 (H0S57_15415) pilP 3176956..3177483 (-) 528 WP_195728319.1 pilus assembly protein PilP Machinery gene
  H0S57_RS15415 (H0S57_15420) pilO 3177483..3178205 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S57_RS15420 (H0S57_15425) pilN 3178202..3178858 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  H0S57_RS15425 (H0S57_15430) pilM 3178858..3179916 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene
  H0S57_RS15430 (H0S57_15435) ponA 3180082..3182610 (+) 2529 WP_195728320.1 penicillin-binding protein PBP1a -
  H0S57_RS15435 (H0S57_15440) - 3182642..3183448 (-) 807 WP_195728321.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24226.65 Da        Isoelectric Point: 5.1439

>NTDB_id=467103 H0S57_RS15420 WP_005401354.1 3178202..3178858(-) (pilN) [Acinetobacter johnsonii strain E10B]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=467103 H0S57_RS15420 WP_005401354.1 3178202..3178858(-) (pilN) [Acinetobacter johnsonii strain E10B]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAGGAACAGGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGGCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGCTTGCAAGGTCAACGCCCTGTGGCTGTTCGTTTGGTCGATGAAATGGTACG
TGTTACACCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAATCTCGAAGCATCGGCATGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATTGTGCCTCGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACGACACCTGAAGCCGCAAGCACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665