Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H0S58_RS12220 Genome accession   NZ_CP059079
Coordinates   2618405..2619631 (+) Length   408 a.a.
NCBI ID   WP_195726649.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2613405..2624631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS12180 (H0S58_12185) rimP 2613940..2614464 (-) 525 WP_053578930.1 ribosome maturation factor RimP -
  H0S58_RS12205 (H0S58_12210) secG 2615248..2615577 (-) 330 WP_053578931.1 preprotein translocase subunit SecG -
  H0S58_RS12210 (H0S58_12215) tpiA 2615591..2616382 (-) 792 WP_193889706.1 triose-phosphate isomerase -
  H0S58_RS12215 (H0S58_12220) pilB 2616663..2618375 (+) 1713 WP_053578933.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H0S58_RS12220 (H0S58_12225) pilC 2618405..2619631 (+) 1227 WP_195726649.1 type II secretion system F family protein Machinery gene
  H0S58_RS12225 (H0S58_12230) pilD 2619631..2620491 (+) 861 WP_195726650.1 prepilin peptidase Machinery gene
  H0S58_RS12230 (H0S58_12235) coaE 2620505..2621095 (+) 591 WP_195726651.1 dephospho-CoA kinase -
  H0S58_RS12235 (H0S58_12240) - 2621112..2622032 (-) 921 WP_195726652.1 DMT family transporter -
  H0S58_RS12240 (H0S58_12245) rlmB 2622070..2622819 (-) 750 WP_092720517.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H0S58_RS12245 (H0S58_12250) - 2622951..2623274 (-) 324 WP_053578939.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44917.36 Da        Isoelectric Point: 9.9538

>NTDB_id=467056 H0S58_RS12220 WP_195726649.1 2618405..2619631(+) (pilC) [Acinetobacter sp. TTH0-4 strain 1BD1]
MAVKKAQMMPIFSYEGVDRKGAKLKGELLARNMALAKVTLRKQGITIKTIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAIIA
GFMEAKKRSKKFRDFLDRAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNRFPSMAVQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLIGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=467056 H0S58_RS12220 WP_195726649.1 2618405..2619631(+) (pilC) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGGCTGTTAAAAAAGCGCAGATGATGCCAATCTTCAGTTATGAAGGGGTAGATCGTAAAGGGGCAAAACTAAAAGGGGA
ATTACTCGCGCGTAATATGGCACTGGCCAAAGTAACCTTACGCAAACAAGGTATTACCATTAAAACCATTCGAGAAAAAA
GAAAAAATATTCTCGAAGGATTAATGAAAAAGAAGGTTTCTACACTCGATATCACTATTTTTACACGCCAACTGGCCACC
ATGATGAAAGCAGGCGTGCCTCTGGTTCAAAGTTTTGAAATTGTCGCTGAAGGTCTTGAAAATCCCTCCATGCGTGAAGT
GGTTCTTGGAATTAAAGGTGAGGTTGAAGGCGGCAACACATTTGCAGGGGCTTTACGCAAATATCCTCAACATTTTGACA
ATTTATTTTGTTCTTTGGTGGAATCGGGCGAACAGTCCGGTGCCTTAGAAACGATGCTTGATCGTGTAGCCATCTATAAA
GAAAAAAGTGAATTACTAAAACAAAAAATTAAAAAAGCCATGAAATATCCAGCAGCAGTTGTCGTGGTTGCGGTCATTGT
GACCATTATTTTGATGGTAAAAGTCGTACCTGTATTCCAAGACCTCTTTAGCTCTTTTGGTGCCGATCTACCTGCTTTTA
CCAAAATGGTGGTCAATATGTCGGAATGGATGCAAAAATATTGGTTTCTTCTGATTATTGCGATCGGCGCCATTATTGCT
GGCTTTATGGAAGCTAAAAAACGTAGTAAAAAGTTTCGTGACTTCTTAGATAGGGCTGCTCTTAAAGCACCCATTTTTGG
TGATTTGGTCTATAAAGCCATTATCGCGCGTTATAGCCGTACATTAGCCACTACTTTTGCTGCGGGTGTACCACTCATTG
ATGCCTTAGAATCTACAGCGGGTGCAACCAATAATGTGGTTTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTGGCA
ACAGGTCAACAATTACAATTTGCTATGCGTGTGACTAATAGATTCCCTTCCATGGCCGTACAAATGGTGGCAATTGGTGA
AGAGTCTGGTGCTCTTGATAGTATGCTGGATAAAGTCGCGACTCATTTTGAAAATGAAGTCGATAATGCTGTAGATGGCC
TGACTTCTATGATGGAACCTTTAATTATGGCTGTCCTAGGTGTCCTAATCGGTGGCTTGGTCATTGCAATGTATCTTCCA
ATCTTCCAAATGGGCTCTGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.461

100

0.895
  pilC Acinetobacter baylyi ADP1

83.824

100

0.838
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.149

97.304

0.517
  pilG Neisseria gonorrhoeae MS11

46.617

97.794

0.456
  pilG Neisseria meningitidis 44/76-A

46.366

97.794

0.453
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.211

97.549

0.412