Detailed information NTG0467057

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H0S58_RS12225
• Genome accession: NZ_CP059079
• Coordinates: 2619631..2620491 (+)
• Length: 286 a.a.
• NCBI ID: WP_195726650.1
• Uniprot ID: -
• Organism: Acinetobacter sp. TTH0-4 strain 1BD1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2614631..2625491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0S58_RS12205 (H0S58_12210)	secG	2615248..2615577 (-)	330	WP_053578931.1	preprotein translocase subunit SecG	-
H0S58_RS12210 (H0S58_12215)	tpiA	2615591..2616382 (-)	792	WP_193889706.1	triose-phosphate isomerase	-
H0S58_RS12215 (H0S58_12220)	pilB	2616663..2618375 (+)	1713	WP_053578933.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H0S58_RS12220 (H0S58_12225)	pilC	2618405..2619631 (+)	1227	WP_195726649.1	type II secretion system F family protein	Machinery gene
H0S58_RS12225 (H0S58_12230)	pilD	2619631..2620491 (+)	861	WP_195726650.1	prepilin peptidase	Machinery gene
H0S58_RS12230 (H0S58_12235)	coaE	2620505..2621095 (+)	591	WP_195726651.1	dephospho-CoA kinase	-
H0S58_RS12235 (H0S58_12240)	-	2621112..2622032 (-)	921	WP_195726652.1	DMT family transporter	-
H0S58_RS12240 (H0S58_12245)	rlmB	2622070..2622819 (-)	750	WP_092720517.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H0S58_RS12245 (H0S58_12250)	-	2622951..2623274 (-)	324	WP_053578939.1	pyrimidine/purine nucleoside phosphorylase	-
H0S58_RS12250 (H0S58_12255)	recN	2623698..2625359 (+)	1662	WP_195726653.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32199.63 Da
• Isoelectric Point: 7.7921

>NTDB_id=467057 H0S58_RS12225 WP_195726650.1 2619631..2620491(+) (pilD) [Acinetobacter sp. TTH0-4 strain 1BD1]
MQEFLNYLINTPTALYLIVGLLSLCIGSFLNVVIYRTPKMMEQEWRTDCQFLLHPEQPMIDETKITLSKPNSTCPKCQSP
IRWYQNIPVISWLILRGQCGSCQNPISIRYPFIELLTAVCSLVVVAVFGPTLQMLFGLLLTWILIALTFIDFDTQLLPDR
YTLTLAALGLGINSYAIYTSPTAAIWGYIIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSM
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=467057 H0S58_RS12225 WP_195726650.1 2619631..2620491(+) (pilD) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGCAAGAATTTCTGAATTATCTGATCAATACTCCAACTGCACTTTATTTGATCGTTGGGCTTTTGAGCCTGTGTATTGG
TAGCTTTCTGAATGTCGTGATTTATCGTACCCCGAAAATGATGGAACAAGAATGGCGTACCGACTGCCAATTTTTACTTC
ATCCAGAACAACCCATGATTGATGAGACTAAAATTACTCTCAGCAAACCAAATTCAACTTGCCCAAAGTGTCAAAGTCCC
ATTCGCTGGTATCAAAATATTCCTGTTATTAGCTGGTTAATACTTCGTGGTCAATGTGGTTCATGCCAAAATCCCATCAG
TATTCGTTATCCTTTTATTGAATTATTAACAGCCGTCTGTTCGTTGGTGGTTGTGGCTGTCTTTGGTCCAACCTTACAGA
TGCTTTTTGGTTTGTTGTTGACATGGATTTTAATCGCCCTCACCTTTATTGATTTTGATACTCAACTTTTACCTGATCGT
TATACTTTAACCTTGGCAGCACTGGGCTTAGGAATAAACAGCTATGCGATTTACACTTCTCCAACCGCTGCTATTTGGGG
CTATATTATTGGCTTCTTATGTCTTTGGGTTGTGTATTACCTGTTCAAAATCATTACAGGCAAAGAAGGTATGGGTTATG
GAGACTTTAAGTTACTAGCTGCGTTAGGTGCATGGATGGGCCCTTTAATGCTGCCATTAATCGTACTGCTTTCTTCTATG
GTGGGTGCAATTATTGGCATTATTCTGCTTAAGATCCGTAAAGAGAATCAACCTTTTGCTTTCGGCCCTTATATAGCCAT
TGCTGGCTGGATTGCCTTTCTCTGGGGTGAACAGATTATGAAAATTTATTTAGGACAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80.351	99.65	0.801
pilD	Acinetobacter nosocomialis M2	80	99.65	0.797
pilD	Vibrio cholerae strain A1552	53.933	93.357	0.504
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	46.617	93.007	0.434