Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | SLUG_RS06910 | Genome accession | NC_017353 |
| Coordinates | 1441340..1441654 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis N920143 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1436340..1446654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SLUG_RS06880 (SLUG_13630) | - | 1437132..1437335 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| SLUG_RS06885 (SLUG_13640) | - | 1437332..1438318 (+) | 987 | WP_002478128.1 | ROK family glucokinase | - |
| SLUG_RS06890 (SLUG_13650) | - | 1438318..1438641 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| SLUG_RS06895 (SLUG_13660) | - | 1438645..1439268 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| SLUG_RS06900 (SLUG_13670) | comGA | 1439315..1440289 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SLUG_RS06905 (SLUG_13680) | comGB | 1440261..1441325 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| SLUG_RS06910 (SLUG_13690) | comGC | 1441340..1441654 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SLUG_RS06915 (SLUG_13700) | comGD | 1441587..1442081 (+) | 495 | WP_232502483.1 | competence type IV pilus minor pilin ComGD | - |
| SLUG_RS06920 (SLUG_13710) | - | 1442068..1442361 (+) | 294 | WP_002478131.1 | hypothetical protein | - |
| SLUG_RS13135 (SLUG_13720) | - | 1442423..1442782 (+) | 360 | WP_002478132.1 | competence type IV pilus minor pilin ComGF | - |
| SLUG_RS06935 (SLUG_13740) | - | 1442936..1443454 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| SLUG_RS06940 (SLUG_13750) | gcvT | 1443624..1444715 (+) | 1092 | WP_014533300.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| SLUG_RS06945 (SLUG_13760) | gcvPA | 1444732..1446081 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=46687 SLUG_RS06910 WP_002459016.1 1441340..1441654(+) (comGC) [Staphylococcus lugdunensis N920143]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=46687 SLUG_RS06910 WP_002459016.1 1441340..1441654(+) (comGC) [Staphylococcus lugdunensis N920143]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |