Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HZ322_RS01870 Genome accession   NZ_CP059049
Coordinates   373404..373793 (+) Length   129 a.a.
NCBI ID   WP_017864128.1    Uniprot ID   A0AAE4NTC1
Organism   Lactococcus lactis strain N8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 373404..381716 373404..373793 within 0


Gene organization within MGE regions


Location: 373404..381716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ322_RS01870 (HZ322_01870) ssbB 373404..373793 (+) 390 WP_017864128.1 single-stranded DNA-binding protein Machinery gene
  HZ322_RS01875 (HZ322_01875) groES 373913..374197 (+) 285 WP_017864129.1 co-chaperone GroES -
  HZ322_RS01880 (HZ322_01880) groL 374285..375913 (+) 1629 WP_003131585.1 chaperonin GroEL -
  HZ322_RS01885 (HZ322_01885) - 375959..376771 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  HZ322_RS01890 (HZ322_01890) - 376940..378382 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK -
  HZ322_RS01895 (HZ322_01895) yycF 378375..379076 (-) 702 WP_003131580.1 response regulator YycF -
  HZ322_RS01900 (HZ322_01900) tmk 379254..379889 (+) 636 WP_012897230.1 dTMP kinase -
  HZ322_RS01905 (HZ322_01905) - 380022..380882 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  HZ322_RS01910 (HZ322_01910) ricT 380934..381716 (+) 783 WP_017864130.1 stage 0 sporulation family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14702.76 Da        Isoelectric Point: 8.3705

>NTDB_id=466797 HZ322_RS01870 WP_017864128.1 373404..373793(+) (ssbB) [Lactococcus lactis strain N8]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGERETDFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=466797 HZ322_RS01870 WP_017864128.1 373404..373793(+) (ssbB) [Lactococcus lactis strain N8]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGACAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372