Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   SSU1300283_RS10200 Genome accession   NZ_CP058741
Coordinates   2101949..2102899 (-) Length   316 a.a.
NCBI ID   WP_002936562.1    Uniprot ID   A0A142UQX7
Organism   Streptococcus suis strain 13-00283-02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096949..2107899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS10160 (SSU1300283_02062) - 2097008..2098195 (-) 1188 WP_002936543.1 acetate kinase -
  SSU1300283_RS10165 (SSU1300283_02063) comYH 2098245..2099198 (-) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  SSU1300283_RS10170 (SSU1300283_02064) comGG 2099255..2099665 (-) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  SSU1300283_RS10175 (SSU1300283_02065) comGF/cglF 2099643..2100077 (-) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSU1300283_RS10180 (SSU1300283_02066) comYE 2100064..2100357 (-) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSU1300283_RS10185 (SSU1300283_02067) comGD 2100329..2100736 (-) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD -
  SSU1300283_RS10190 (SSU1300283_02068) comYC 2100717..2100998 (-) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  SSU1300283_RS10195 (SSU1300283_02069) comYB 2101000..2102037 (-) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSU1300283_RS10200 (SSU1300283_02070) comYA 2101949..2102899 (-) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  SSU1300283_RS10205 (SSU1300283_02071) - 2102985..2103935 (+) 951 WP_014636751.1 S66 peptidase family protein -
  SSU1300283_RS10210 (SSU1300283_02072) - 2103970..2104335 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35490.39 Da        Isoelectric Point: 6.1802

>NTDB_id=465214 SSU1300283_RS10200 WP_002936562.1 2101949..2102899(-) (comYA) [Streptococcus suis strain 13-00283-02]
MIQEKARKLIEKAVADRVSDIYLVPRGESYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIRGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=465214 SSU1300283_RS10200 WP_002936562.1 2101949..2102899(-) (comYA) [Streptococcus suis strain 13-00283-02]
ATGATTCAAGAAAAAGCAAGAAAGTTGATTGAAAAGGCAGTGGCGGATAGGGTCAGTGACATTTATCTGGTTCCTCGCGG
GGAAAGCTATCAAGTTTATCATCGCATCATGGATGAACGGGAGTTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTCTGGTGATCCGCTTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCTGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAACAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGTCTGACAGGAGCGACGGTCTTCTCAACGGTTCACGCAAGGTCTATTTCGGGTGTCTAT
GCTCGTATGTTGGAATTGGGGGTCAGTCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCAG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTAGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UQX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.952

98.418

0.639
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.952

98.418

0.639
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.952

98.418

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.952

98.418

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.952

98.418

0.639
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.839

98.101

0.636
  comGA Lactococcus lactis subsp. cremoris KW2

53.943

100

0.541
  comGA Latilactobacillus sakei subsp. sakei 23K

41.516

87.658

0.364