Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SSU1300283_RS10165 Genome accession   NZ_CP058741
Coordinates   2098245..2099198 (-) Length   317 a.a.
NCBI ID   WP_002936545.1    Uniprot ID   A0A0Z8FFJ3
Organism   Streptococcus suis strain 13-00283-02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2093245..2104198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS10145 (SSU1300283_02059) pepA 2093726..2094787 (+) 1062 WP_002936538.1 glutamyl aminopeptidase -
  SSU1300283_RS10150 (SSU1300283_02060) - 2094832..2096088 (-) 1257 WP_002936539.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SSU1300283_RS10155 (SSU1300283_02061) - 2096142..2096693 (-) 552 WP_014636756.1 folate family ECF transporter S component -
  SSU1300283_RS10160 (SSU1300283_02062) - 2097008..2098195 (-) 1188 WP_002936543.1 acetate kinase -
  SSU1300283_RS10165 (SSU1300283_02063) comYH 2098245..2099198 (-) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  SSU1300283_RS10170 (SSU1300283_02064) comGG 2099255..2099665 (-) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  SSU1300283_RS10175 (SSU1300283_02065) comGF/cglF 2099643..2100077 (-) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSU1300283_RS10180 (SSU1300283_02066) comYE 2100064..2100357 (-) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSU1300283_RS10185 (SSU1300283_02067) comGD 2100329..2100736 (-) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD -
  SSU1300283_RS10190 (SSU1300283_02068) comYC 2100717..2100998 (-) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  SSU1300283_RS10195 (SSU1300283_02069) comYB 2101000..2102037 (-) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSU1300283_RS10200 (SSU1300283_02070) comYA 2101949..2102899 (-) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  SSU1300283_RS10205 (SSU1300283_02071) - 2102985..2103935 (+) 951 WP_014636751.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35731.76 Da        Isoelectric Point: 4.3950

>NTDB_id=465209 SSU1300283_RS10165 WP_002936545.1 2098245..2099198(-) (comYH) [Streptococcus suis strain 13-00283-02]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=465209 SSU1300283_RS10165 WP_002936545.1 2098245..2099198(-) (comYH) [Streptococcus suis strain 13-00283-02]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTTAACGCCAGTCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGCTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGGTCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8FFJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599