Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HQ393_RS10770 Genome accession   NZ_CP058627
Coordinates   2289115..2290341 (+) Length   408 a.a.
NCBI ID   WP_179355187.1    Uniprot ID   -
Organism   Chitinibacter bivalviorum strain 2T18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2284115..2295341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ393_RS10750 (HQ393_10750) rpsP 2284596..2284844 (-) 249 WP_179355183.1 30S ribosomal protein S16 -
  HQ393_RS10755 (HQ393_10755) ffh 2284944..2286287 (-) 1344 WP_179355184.1 signal recognition particle protein -
  HQ393_RS10760 (HQ393_10760) - 2286369..2287175 (+) 807 WP_179355185.1 inner membrane protein YpjD -
  HQ393_RS10765 (HQ393_10765) pilB 2287395..2289101 (+) 1707 WP_179355186.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HQ393_RS10770 (HQ393_10770) pilC 2289115..2290341 (+) 1227 WP_179355187.1 type II secretion system F family protein Machinery gene
  HQ393_RS10775 (HQ393_10775) pilD 2290346..2291203 (+) 858 WP_179355188.1 A24 family peptidase Machinery gene
  HQ393_RS10780 (HQ393_10780) coaE 2291203..2291808 (+) 606 WP_179355189.1 dephospho-CoA kinase -
  HQ393_RS10785 (HQ393_10785) zapD 2291871..2292629 (+) 759 WP_179355190.1 cell division protein ZapD -
  HQ393_RS10790 (HQ393_10790) - 2292629..2292820 (+) 192 WP_179355191.1 DNA gyrase inhibitor YacG -
  HQ393_RS10795 (HQ393_10795) - 2292918..2293670 (+) 753 WP_179355192.1 GNAT family N-acetyltransferase -
  HQ393_RS10800 (HQ393_10800) - 2293698..2294549 (+) 852 WP_179355193.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HQ393_RS10805 (HQ393_10805) - 2294434..2295252 (-) 819 WP_179355194.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44391.43 Da        Isoelectric Point: 10.0645

>NTDB_id=464679 HQ393_RS10770 WP_179355187.1 2289115..2290341(+) (pilC) [Chitinibacter bivalviorum strain 2T18]
MAVKPKSPAVKDSTFRWEGKDRTGKVVKGEMRAVSESIVKSTLRRQGINVTSVKKVRLGAGRKITELDITMFTRQLATML
KSGVPLLTAFDIVAKGHSNPSVTKLLMEIKTDIETGSSLTQAFRKHPNQFDSLYCNLVQAGEQAGILDALLARLATYKEK
ILAVKKKIKSAMFYPTAIIVAAFVITAVIMIFVIPAFKELFSSFGADLPGPTLLVMNISDIFVTYWYIIFGSIFGGIYLF
MKAWKKSEKIQFAMDRLILKLPVLGEIVRNATIARWSRTLSTMFAAGVPLVESLESVGGAAGNIVYKQATQRIQSEVSTG
TSLTAAMQNATVFPNMVLQMVSIGEESGSLDAMLSKVADYFEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVIAMYLPIF
KMGAAVGG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=464679 HQ393_RS10770 WP_179355187.1 2289115..2290341(+) (pilC) [Chitinibacter bivalviorum strain 2T18]
ATGGCCGTAAAACCCAAAAGCCCCGCAGTAAAAGATTCAACTTTTCGCTGGGAAGGCAAAGACCGCACCGGCAAAGTAGT
TAAAGGTGAAATGCGTGCTGTCAGCGAATCCATCGTAAAAAGCACTTTACGTCGCCAAGGGATCAACGTCACGAGCGTAA
AAAAAGTACGTCTCGGTGCTGGCCGCAAGATCACAGAACTCGACATCACGATGTTTACTCGACAATTGGCCACTATGTTG
AAGTCAGGCGTACCGCTCCTTACTGCATTCGATATCGTTGCAAAGGGGCACAGCAATCCTTCCGTCACAAAATTACTGAT
GGAAATAAAAACCGACATCGAAACAGGCTCTTCTTTAACCCAAGCCTTCAGAAAACATCCAAATCAATTCGATAGCCTCT
ATTGCAACTTGGTACAAGCTGGTGAACAAGCGGGTATTTTGGACGCTTTGCTGGCTCGACTTGCCACCTACAAAGAAAAA
ATCTTAGCCGTTAAGAAAAAAATCAAATCGGCCATGTTTTACCCAACGGCCATTATTGTCGCTGCTTTCGTCATTACCGC
CGTGATTATGATTTTTGTAATTCCAGCATTTAAGGAGCTCTTCTCGAGTTTTGGTGCCGATCTACCAGGGCCAACCTTAT
TAGTCATGAATATCTCCGATATTTTTGTAACTTACTGGTACATCATTTTTGGCAGCATCTTCGGCGGCATCTATCTATTC
ATGAAAGCTTGGAAAAAGTCGGAAAAGATCCAATTTGCCATGGACCGATTAATCTTAAAATTACCAGTCCTTGGTGAGAT
TGTCCGCAACGCAACCATCGCACGCTGGAGTCGTACCTTATCAACAATGTTTGCAGCGGGGGTACCGTTAGTGGAGTCAC
TTGAATCTGTTGGAGGCGCTGCCGGCAATATTGTTTACAAACAAGCAACACAACGGATTCAATCCGAAGTTAGCACGGGA
ACAAGCCTTACTGCCGCAATGCAAAATGCCACCGTTTTCCCGAATATGGTATTGCAAATGGTATCCATCGGCGAAGAATC
GGGCTCACTCGATGCCATGCTCAGCAAAGTAGCCGACTACTTTGAAGAAGAAGTAGATAACGCAGTCGAAGCCCTATCCA
GCCTCATGGAACCCATTATTATGGTAGTATTGGGCACCTTAATTGGTGGTCTGGTTATTGCCATGTACCTCCCCATTTTC
AAAATGGGCGCAGCGGTGGGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.637

97.794

0.534
  pilC Pseudomonas stutzeri DSM 10701

51.621

98.284

0.507
  pilG Neisseria gonorrhoeae MS11

51.378

97.794

0.502
  pilC Acinetobacter baumannii D1279779

51.005

97.549

0.498
  pilG Neisseria meningitidis 44/76-A

50.877

97.794

0.498
  pilC Acinetobacter baylyi ADP1

50.378

97.304

0.49
  pilC Vibrio cholerae strain A1552

39.85

97.794

0.39
  pilC Vibrio campbellii strain DS40M4

37.805

100

0.38