Detailed information NTG0464680

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HQ393_RS10775
• Genome accession: NZ_CP058627
• Coordinates: 2290346..2291203 (+)
• Length: 285 a.a.
• NCBI ID: WP_179355188.1
• Uniprot ID: -
• Organism: Chitinibacter bivalviorum strain 2T18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2285346..2296203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ393_RS10760 (HQ393_10760)	-	2286369..2287175 (+)	807	WP_179355185.1	inner membrane protein YpjD	-
HQ393_RS10765 (HQ393_10765)	pilB	2287395..2289101 (+)	1707	WP_179355186.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HQ393_RS10770 (HQ393_10770)	pilC	2289115..2290341 (+)	1227	WP_179355187.1	type II secretion system F family protein	Machinery gene
HQ393_RS10775 (HQ393_10775)	pilD	2290346..2291203 (+)	858	WP_179355188.1	A24 family peptidase	Machinery gene
HQ393_RS10780 (HQ393_10780)	coaE	2291203..2291808 (+)	606	WP_179355189.1	dephospho-CoA kinase	-
HQ393_RS10785 (HQ393_10785)	zapD	2291871..2292629 (+)	759	WP_179355190.1	cell division protein ZapD	-
HQ393_RS10790 (HQ393_10790)	-	2292629..2292820 (+)	192	WP_179355191.1	DNA gyrase inhibitor YacG	-
HQ393_RS10795 (HQ393_10795)	-	2292918..2293670 (+)	753	WP_179355192.1	GNAT family N-acetyltransferase	-
HQ393_RS10800 (HQ393_10800)	-	2293698..2294549 (+)	852	WP_179355193.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
HQ393_RS10805 (HQ393_10805)	-	2294434..2295252 (-)	819	WP_179355194.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
HQ393_RS10810 (HQ393_10810)	rplQ	2295346..2295732 (-)	387	WP_179355195.1	50S ribosomal protein L17	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31091.03 Da
• Isoelectric Point: 7.5704

>NTDB_id=464680 HQ393_RS10775 WP_179355188.1 2290346..2291203(+) (pilD) [Chitinibacter bivalviorum strain 2T18]
MIEVFNSNYLLIGFTAVLGLMIGSFLNVVIHRLPLMLEKEFRLECQTLLNPELDETNRPSTYNLATPRSACPTCGHQIKA
IENIPILSWLALKGRCSQCHSKISARYPCVEFATAAISAGLAIHFGPSLQLLGALAFAWCLVALIMIDADTYLLPDSITL
PLLWLGLLLNTQGIYTSLPSAVYGATFGYLSLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGFAMLPIIILLSSLAGA
ILGIIMVAGSQRGWNKPMPFGPYLGIAGMIAMVWGKEITLMLYGY

Nucleotide

• Length: 858 bp

>NTDB_id=464680 HQ393_RS10775 WP_179355188.1 2290346..2291203(+) (pilD) [Chitinibacter bivalviorum strain 2T18]
ATGATTGAGGTTTTTAATTCCAATTACTTGTTAATTGGATTCACTGCGGTACTTGGCTTAATGATTGGTAGCTTTTTGAA
TGTCGTCATTCATCGGCTACCTCTCATGCTAGAAAAAGAATTTCGCTTAGAGTGTCAAACACTCTTAAATCCCGAACTAG
ACGAAACGAATCGCCCTTCAACATACAATTTAGCGACACCTCGTTCGGCATGCCCTACCTGTGGGCATCAAATCAAAGCG
ATTGAAAACATCCCTATACTAAGCTGGTTGGCATTGAAAGGGCGATGCAGTCAATGCCACAGCAAGATTAGTGCTCGTTA
CCCATGCGTCGAATTCGCAACGGCCGCCATATCCGCGGGGCTTGCCATCCATTTTGGGCCAAGCCTACAACTATTAGGCG
CTTTGGCATTCGCATGGTGTCTCGTTGCACTAATCATGATTGATGCCGACACCTACCTACTACCCGATAGCATTACATTA
CCTCTACTCTGGTTGGGCCTATTACTTAACACCCAAGGGATTTACACCTCACTACCTAGCGCAGTATATGGTGCAACATT
CGGATATCTCTCACTTTGGAGCATATACTGGCTATTCAAGCTAGCAACAGGCAAAGAAGGCATGGGGTATGGTGACTTTA
AACTTTTAGCAGCCCTTGGTGCGTGGCTTGGTTTTGCCATGCTACCAATCATTATCCTACTGTCTTCATTAGCTGGCGCC
ATCTTAGGCATCATTATGGTGGCAGGTAGTCAACGCGGCTGGAATAAACCCATGCCTTTCGGCCCCTATCTTGGTATTGC
AGGCATGATTGCAATGGTATGGGGCAAAGAAATCACATTGATGCTGTACGGATATTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.373	92.281	0.502
pilD	Vibrio campbellii strain DS40M4	51.254	97.895	0.502
pilD	Acinetobacter nosocomialis M2	53.03	92.632	0.491
pilD	Acinetobacter baumannii D1279779	53.03	92.632	0.491
pilD	Neisseria gonorrhoeae MS11	48.077	91.228	0.439