Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | JHS83_RS04470 | Genome accession | NZ_CP068622 |
| Coordinates | 950138..950422 (+) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain LH24 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 945138..955422
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHS83_RS04460 (JHS83_04455) | - | 947656..947928 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| JHS83_RS04465 (JHS83_04460) | ppiD | 948128..949987 (+) | 1860 | WP_140391323.1 | peptidylprolyl isomerase | - |
| JHS83_RS04470 (JHS83_04465) | comEA | 950138..950422 (+) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| JHS83_RS04475 (JHS83_04470) | rrtA | 950513..951064 (-) | 552 | WP_005482515.1 | rhombosortase | - |
| JHS83_RS04480 (JHS83_04475) | - | 951068..951682 (+) | 615 | WP_005456903.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| JHS83_RS04485 (JHS83_04480) | - | 951689..953023 (-) | 1335 | WP_041954079.1 | anti-phage deoxyguanosine triphosphatase | - |
| JHS83_RS04490 (JHS83_04485) | yfbR | 953036..953620 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| JHS83_RS04495 (JHS83_04490) | - | 953711..954925 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=460047 JHS83_RS04470 WP_021449594.1 950138..950422(+) (comEA) [Vibrio parahaemolyticus strain LH24]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=460047 JHS83_RS04470 WP_021449594.1 950138..950422(+) (comEA) [Vibrio parahaemolyticus strain LH24]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |