Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HWV00_RS19420 Genome accession   NZ_CP056123
Coordinates   4353163..4354416 (+) Length   417 a.a.
NCBI ID   WP_211683890.1    Uniprot ID   -
Organism   Moritella sp. 24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4348163..4359416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV00_RS19395 (HWV00_19395) ampD 4348402..4348965 (-) 564 WP_211683880.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HWV00_RS19400 (HWV00_19400) - 4349119..4349625 (+) 507 WP_211683882.1 TIGR02281 family clan AA aspartic protease -
  HWV00_RS19405 (HWV00_19405) nadC 4349650..4350492 (+) 843 WP_211683884.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HWV00_RS19410 (HWV00_19410) - 4350928..4351386 (+) 459 WP_211683886.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HWV00_RS19415 (HWV00_19415) pilB 4351393..4353096 (+) 1704 WP_211683888.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV00_RS19420 (HWV00_19420) pilC 4353163..4354416 (+) 1254 WP_211683890.1 type II secretion system F family protein Machinery gene
  HWV00_RS19425 (HWV00_19425) pilD 4354536..4355423 (+) 888 WP_211683892.1 A24 family peptidase Machinery gene
  HWV00_RS19430 (HWV00_19430) coaE 4355435..4356040 (+) 606 WP_211683894.1 dephospho-CoA kinase -
  HWV00_RS19435 (HWV00_19435) yacG 4356068..4356259 (+) 192 WP_211686713.1 DNA gyrase inhibitor YacG -
  HWV00_RS19440 (HWV00_19440) mutT 4356292..4356684 (-) 393 WP_211683896.1 8-oxo-dGTP diphosphatase MutT -
  HWV00_RS21660 - 4356825..4356911 (-) 87 Protein_3733 SEC-C metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45757.00 Da        Isoelectric Point: 9.8806

>NTDB_id=458298 HWV00_RS19420 WP_211683890.1 4353163..4354416(+) (pilC) [Moritella sp. 24]
MVAVTKKANNTNTSTVKKRYPYNWQGVNRKGKKVSGEMQSESISNLKVELRRQGINVLKANRKSTGLFSSAKAKIKPMDI
AIISRQIATMLNAGVPLVQSLEIIARSHDNPTMRSLIGEVAAEVATGTTLSDTLRKHPLYFDDLYCDLISAGEQSGSLDS
IYDRIATYKEKAEALKSKIKKAMFYPAMVVAVATIVTLILLLYVIPQFKDIFASFGAELPPFTLFVLSISDFVSQFWYLV
IGILFGMPFIYLKANKRSMKIKHMSERSILKIPAIGPIMHKGAMARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKSA
VMEMRSEVIAGLQMHIAMRSTNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLGIVIG
GLVIAMYLPIFEMGSIM

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=458298 HWV00_RS19420 WP_211683890.1 4353163..4354416(+) (pilC) [Moritella sp. 24]
ATGGTAGCAGTAACTAAAAAAGCTAATAACACCAACACATCGACAGTCAAAAAACGCTATCCCTACAACTGGCAAGGCGT
TAATCGCAAAGGTAAAAAAGTCAGTGGCGAAATGCAATCTGAAAGCATCAGCAATCTCAAAGTGGAATTACGTCGCCAAG
GTATTAATGTATTAAAAGCTAACCGTAAATCCACGGGATTATTTTCCAGTGCGAAAGCTAAAATTAAACCGATGGATATT
GCAATTATTTCACGTCAAATTGCAACCATGTTAAATGCAGGCGTTCCACTCGTACAAAGTTTAGAAATTATTGCACGTAG
TCATGACAACCCAACAATGCGTTCACTCATCGGCGAAGTTGCAGCCGAAGTCGCCACAGGGACTACATTGTCAGACACCC
TACGTAAACACCCTCTTTATTTTGATGATTTGTATTGCGACCTTATCAGCGCAGGTGAGCAATCCGGTTCGCTGGACAGT
ATTTATGATCGTATCGCGACTTACAAAGAAAAAGCCGAAGCGCTGAAATCAAAGATCAAAAAAGCCATGTTCTATCCCGC
TATGGTGGTTGCAGTAGCGACAATCGTCACCTTGATTTTACTACTCTACGTTATTCCACAATTCAAAGATATCTTCGCTA
GCTTTGGTGCTGAACTACCGCCCTTCACGCTATTCGTATTATCTATCTCCGATTTTGTGAGCCAATTTTGGTATTTGGTG
ATCGGGATATTATTTGGAATGCCCTTTATCTACCTTAAAGCCAATAAACGCTCTATGAAAATAAAACACATGAGTGAACG
TAGCATCCTGAAAATTCCAGCGATTGGTCCAATTATGCACAAAGGCGCAATGGCCCGTTTTGCCAGAACCTTATCGACAA
CATTTGCAGCTGGTATCCCACTGGTCGACTCGCTGACTTCAGCCGCAGGGGCATCCGGTAATATTGTTTATAAAAGCGCG
GTAATGGAAATGCGCAGCGAAGTCATCGCAGGATTACAGATGCACATCGCCATGCGCTCAACGAATTTATTTCCAGATAT
GGTCACACAGATGGTGATGATTGGTGAAGAGTCAGGCTCACTTGATGATATGTTAGCAAAGGTTGCGCATATTTATGAAC
AACAAGTCGATGATGCTGTTGATGGGCTTACCAGTTTAATTGAACCAATGATTATGGTGGTATTGGGTATAGTCATTGGT
GGGCTGGTGATTGCAATGTACTTACCTATTTTTGAAATGGGCAGCATTATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

94.964

0.53
  pilC Acinetobacter baylyi ADP1

51.385

95.204

0.489
  pilC Acinetobacter baumannii D1279779

50.25

95.923

0.482
  pilC Legionella pneumophila strain ERS1305867

50.761

94.484

0.48
  pilC Vibrio cholerae strain A1552

46.348

95.204

0.441
  pilG Neisseria gonorrhoeae MS11

44.665

96.643

0.432
  pilG Neisseria meningitidis 44/76-A

44.417

96.643

0.429
  pilC Vibrio campbellii strain DS40M4

44.836

95.204

0.427