Detailed information NTG0458299

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HWV00_RS19425
• Genome accession: NZ_CP056123
• Coordinates: 4354536..4355423 (+)
• Length: 295 a.a.
• NCBI ID: WP_211683892.1
• Uniprot ID: -
• Organism: Moritella sp. 24
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4349536..4360423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWV00_RS19405 (HWV00_19405)	nadC	4349650..4350492 (+)	843	WP_211683884.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HWV00_RS19410 (HWV00_19410)	-	4350928..4351386 (+)	459	WP_211683886.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HWV00_RS19415 (HWV00_19415)	pilB	4351393..4353096 (+)	1704	WP_211683888.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HWV00_RS19420 (HWV00_19420)	pilC	4353163..4354416 (+)	1254	WP_211683890.1	type II secretion system F family protein	Machinery gene
HWV00_RS19425 (HWV00_19425)	pilD	4354536..4355423 (+)	888	WP_211683892.1	A24 family peptidase	Machinery gene
HWV00_RS19430 (HWV00_19430)	coaE	4355435..4356040 (+)	606	WP_211683894.1	dephospho-CoA kinase	-
HWV00_RS19435 (HWV00_19435)	yacG	4356068..4356259 (+)	192	WP_211686713.1	DNA gyrase inhibitor YacG	-
HWV00_RS19440 (HWV00_19440)	mutT	4356292..4356684 (-)	393	WP_211683896.1	8-oxo-dGTP diphosphatase MutT	-
HWV00_RS21660	-	4356825..4356911 (-)	87	Protein_3733	SEC-C metal-binding domain-containing protein	-
HWV00_RS19445 (HWV00_19445)	secA	4357007..4359545 (-)	2539	Protein_3734	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32932.13 Da
• Isoelectric Point: 6.4608

>NTDB_id=458299 HWV00_RS19425 WP_211683892.1 4354536..4355423(+) (pilD) [Moritella sp. 24]
MQDLALLFQLYPWLLWLSVALLGLLVGSFLNVVIYRLPIMMEHEWKQECTVYFSDECKAVTPEHQAAKFNLLLPRSACPK
CNHQITALENIPVISWLVLRGKCSSCANPISARYPSIELLTGLLSLAVAFYIPYGIQLAGALLLTWCLVALTFIDIDKML
LPDQMTLPLLWLGLLLNVNYAWVTPSDAIIGAIVGYLSLWSVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSILAIVL
LSSFAGAIIGISQIALKKHTQGNPIPFGPYLAIAGWLYLIWGDQIVDFYLSNFIY

Nucleotide

• Length: 888 bp

>NTDB_id=458299 HWV00_RS19425 WP_211683892.1 4354536..4355423(+) (pilD) [Moritella sp. 24]
ATGCAAGACTTAGCGCTACTCTTTCAACTCTATCCTTGGCTATTATGGCTATCTGTTGCTTTACTTGGTCTACTGGTTGG
TAGCTTCCTTAATGTCGTGATCTACCGTTTACCAATTATGATGGAACATGAATGGAAACAAGAGTGCACCGTCTATTTCA
GTGACGAATGTAAAGCTGTAACACCAGAACACCAAGCAGCTAAATTTAACTTATTGCTGCCCCGCTCTGCTTGCCCTAAA
TGCAATCATCAAATTACCGCATTAGAAAATATTCCAGTGATCAGTTGGTTGGTATTACGTGGTAAATGCAGTAGTTGCGC
AAACCCAATATCTGCACGTTATCCAAGTATCGAGCTCCTCACTGGACTCTTATCTTTGGCTGTTGCCTTTTACATCCCTT
ACGGTATTCAATTAGCAGGAGCCTTATTACTAACATGGTGTTTAGTCGCGCTAACCTTCATTGATATAGATAAAATGTTA
TTGCCCGATCAAATGACATTACCGCTATTATGGTTAGGTTTATTACTTAACGTTAATTACGCATGGGTAACACCTTCAGA
TGCCATCATTGGGGCAATTGTAGGTTACTTATCACTCTGGTCGGTGTATTGGGGTTTTAAGCTACTGACCGGAAAAGAGG
GCATGGGCTATGGAGACTTTAAACTATTAGCTGCATTTGGCGCTTGGTTTGGTTGGCAATCTATTTTGGCGATTGTTCTA
CTCTCTTCATTTGCTGGCGCTATTATCGGTATTAGCCAAATCGCACTAAAAAAACATACCCAAGGTAACCCGATCCCATT
TGGCCCTTATCTTGCGATTGCAGGTTGGTTATATCTTATCTGGGGCGATCAAATCGTTGATTTCTACCTGTCTAACTTTA
TCTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (143-251)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.055	97.966	0.549
pilD	Vibrio campbellii strain DS40M4	55.017	97.966	0.539
pilD	Acinetobacter nosocomialis M2	53.425	98.983	0.529
pilD	Acinetobacter baumannii D1279779	53.608	98.644	0.529
pilD	Neisseria gonorrhoeae MS11	46.992	90.169	0.424