Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HWV01_RS01365 Genome accession   NZ_CP056122
Coordinates   287121..288371 (-) Length   416 a.a.
NCBI ID   WP_211673736.1    Uniprot ID   -
Organism   Moritella sp. 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282121..293371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV01_RS01345 (HWV01_01340) mutT 284864..285256 (+) 393 WP_211675601.1 8-oxo-dGTP diphosphatase MutT -
  HWV01_RS01350 (HWV01_01345) yacG 285279..285470 (-) 192 WP_211675603.1 DNA gyrase inhibitor YacG -
  HWV01_RS01355 (HWV01_01350) coaE 285497..286102 (-) 606 WP_211673734.1 dephospho-CoA kinase -
  HWV01_RS01360 (HWV01_01355) pilD 286114..287001 (-) 888 WP_211673735.1 A24 family peptidase Machinery gene
  HWV01_RS01365 (HWV01_01360) pilC 287121..288371 (-) 1251 WP_211673736.1 type II secretion system F family protein Machinery gene
  HWV01_RS01370 (HWV01_01365) pilB 288457..290160 (-) 1704 WP_211673737.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV01_RS01375 (HWV01_01370) - 290167..290580 (-) 414 WP_211673738.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HWV01_RS01380 (HWV01_01375) nadC 290969..291811 (-) 843 WP_211673739.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HWV01_RS01385 (HWV01_01380) - 291836..292342 (-) 507 WP_211673740.1 TIGR02281 family clan AA aspartic protease -
  HWV01_RS01390 (HWV01_01385) ampD 292487..293059 (+) 573 WP_211673741.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45610.79 Da        Isoelectric Point: 9.9594

>NTDB_id=458258 HWV01_RS01365 WP_211673736.1 287121..288371(-) (pilC) [Moritella sp. 5]
MVAVTKKANRSTSTVKKRYPYNWQGVNRKGKKVSGEMQAESISNLKVELRRQGINVLKANRKSTGLFSKATAKIKPMDIA
LISRQISTMLSAGVPLVQSLEIIARSNDNPSMRALIGEVAAEVATGTPLSDALRKHPLYFDDLYCDLISAGEQSGSLDSI
YDRIATYKEKSEALKSKIKKAMFYPIMVLAVATVVTLILLLYVIPQFKDIFSSFGAELPPFTLFVLSISDFVSQFWYLVI
GILFGLPFIYLKANKRSIKVKHLTERSILNIPAIGPILHKGAMARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKNAV
MNMRNEVIAGLQMHIAMRSTNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLGVVIGG
LVIAMYLPIFEMGNIM

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=458258 HWV01_RS01365 WP_211673736.1 287121..288371(-) (pilC) [Moritella sp. 5]
ATGGTCGCAGTAACTAAAAAAGCCAATCGCAGCACATCGACAGTCAAAAAACGCTATCCCTATAACTGGCAAGGCGTTAA
CCGCAAAGGTAAAAAGGTCAGTGGTGAGATGCAAGCTGAAAGCATCAGTAACTTAAAAGTTGAGTTACGCCGTCAAGGTA
TTAATGTATTAAAAGCCAATCGTAAATCAACAGGCTTATTTTCCAAAGCCACGGCTAAAATAAAACCGATGGATATTGCG
CTTATTTCACGACAAATTTCAACCATGCTTAGTGCTGGCGTACCGCTCGTACAGAGTTTAGAGATTATAGCCCGCAGTAA
TGATAACCCTTCCATGCGCGCGCTAATTGGTGAAGTTGCAGCGGAAGTAGCGACGGGTACTCCGCTTTCTGATGCATTAC
GTAAACACCCTCTTTATTTTGATGACTTATATTGTGATCTTATTAGTGCCGGTGAACAGTCCGGTTCATTAGACAGTATT
TATGATCGTATCGCGACTTATAAAGAAAAATCTGAAGCTCTCAAATCTAAGATAAAAAAAGCCATGTTCTACCCGATTAT
GGTACTCGCAGTTGCAACTGTCGTGACACTTATTTTATTACTCTATGTGATCCCCCAATTCAAAGACATTTTTTCCAGTT
TTGGTGCTGAGCTTCCCCCTTTCACCCTGTTTGTCTTATCTATTTCTGACTTTGTCAGTCAATTTTGGTATTTGGTGATC
GGGATATTATTTGGATTACCTTTTATTTACCTTAAGGCCAATAAACGGTCCATCAAAGTTAAGCACCTGACCGAACGGAG
TATTCTCAACATACCAGCCATTGGGCCAATACTACACAAAGGGGCGATGGCGCGTTTTGCTAGAACCCTTTCAACAACTT
TTGCAGCAGGTATTCCGCTCGTAGATTCATTAACGTCAGCAGCAGGCGCATCAGGTAACATTGTTTATAAAAATGCGGTG
ATGAATATGCGTAATGAAGTGATCGCCGGATTACAAATGCATATTGCCATGCGCTCAACCAATTTATTTCCTGATATGGT
CACGCAAATGGTGATGATCGGTGAAGAGTCAGGCTCACTTGATGATATGTTGGCGAAAGTCGCCCATATTTATGAACAAC
AAGTTGATGATGCGGTCGATGGCTTAACCAGTTTAATCGAACCCATGATCATGGTGGTATTAGGTGTGGTCATCGGCGGC
CTCGTTATTGCTATGTATTTACCTATCTTTGAAATGGGCAATATTATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-205)

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

95.192

0.522
  pilC Acinetobacter baylyi ADP1

51

96.154

0.49
  pilC Acinetobacter baumannii D1279779

49.75

96.154

0.478
  pilC Legionella pneumophila strain ERS1305867

50.254

94.712

0.476
  pilG Neisseria gonorrhoeae MS11

44.665

96.875

0.433
  pilC Vibrio cholerae strain A1552

44.975

95.673

0.43
  pilG Neisseria meningitidis 44/76-A

44.169

96.875

0.428
  pilC Vibrio campbellii strain DS40M4

44.389

96.394

0.428