Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JJN14_RS08575 Genome accession   NZ_CP067992
Coordinates   1730140..1730736 (+) Length   198 a.a.
NCBI ID   WP_004263564.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1725140..1735736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08550 (JJN14_08550) mapZ 1726105..1727487 (-) 1383 WP_201058425.1 cell division site-positioning protein MapZ -
  JJN14_RS08555 (JJN14_08555) - 1727500..1728657 (-) 1158 WP_201058426.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  JJN14_RS08565 (JJN14_08565) gpsB 1729144..1729473 (-) 330 WP_000146534.1 cell division regulator GpsB -
  JJN14_RS08570 (JJN14_08570) - 1729546..1730073 (-) 528 WP_201058427.1 DUF1273 domain-containing protein -
  JJN14_RS08575 (JJN14_08575) recU 1730140..1730736 (+) 597 WP_004263564.1 Holliday junction resolvase RecU Machinery gene
  JJN14_RS08580 (JJN14_08580) pbp1a 1730733..1732928 (+) 2196 WP_201058428.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23147.62 Da        Isoelectric Point: 9.9588

>NTDB_id=458259 JJN14_RS08575 WP_004263564.1 1730140..1730736(+) (recU) [Streptococcus mitis strain S022-V7-A3]
MVNYPHKISSKKNKTSISQPNNFANRGMTFEKMINATNDYYLTHGMAVIHKKPTPVQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYRGHYIDFEAKETRQKNAIPMKNFHLHQIQHMEQVLEQQGICFVLLHFSSKQETYLLPAFDLIRFYHQDKGQK
SMPLGYIQEYGYLVKQGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=458259 JJN14_RS08575 WP_004263564.1 1730140..1730736(+) (recU) [Streptococcus mitis strain S022-V7-A3]
ATGGTCAACTATCCTCATAAAATTTCATCAAAAAAAAACAAAACATCCATTTCTCAACCAAATAATTTCGCAAATCGAGG
AATGACTTTTGAAAAGATGATTAACGCTACAAACGACTACTATCTGACGCATGGTATGGCAGTTATCCATAAAAAACCCA
CGCCTGTTCAAATTGTCCGAGTAGACTATCCTCAACGTAGTAGAGCCAAAATTGTAGAAGCCTATTTTAGACAAGCTTCC
ACAACAGATTACTCTGGCGTGTATAGAGGACATTACATTGACTTTGAAGCCAAGGAAACACGACAAAAGAATGCTATTCC
AATGAAGAACTTCCATCTTCACCAGATTCAACATATGGAACAAGTTCTAGAACAGCAGGGTATTTGCTTCGTACTGCTTC
ATTTTTCTTCTAAACAGGAAACTTATTTGTTGCCGGCATTTGATTTGATTCGCTTTTATCATCAAGATAAGGGGCAAAAA
TCTATGCCACTTGGATATATTCAAGAATATGGATATTTAGTAAAGCAAGGGGCTTTCCCTCAAATTCCCTATCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49