Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HWV01_RS01360 Genome accession   NZ_CP056122
Coordinates   286114..287001 (-) Length   295 a.a.
NCBI ID   WP_211673735.1    Uniprot ID   -
Organism   Moritella sp. 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281114..292001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV01_RS01340 (HWV01_01335) secA 282027..284744 (+) 2718 WP_211673733.1 preprotein translocase subunit SecA -
  HWV01_RS01345 (HWV01_01340) mutT 284864..285256 (+) 393 WP_211675601.1 8-oxo-dGTP diphosphatase MutT -
  HWV01_RS01350 (HWV01_01345) yacG 285279..285470 (-) 192 WP_211675603.1 DNA gyrase inhibitor YacG -
  HWV01_RS01355 (HWV01_01350) coaE 285497..286102 (-) 606 WP_211673734.1 dephospho-CoA kinase -
  HWV01_RS01360 (HWV01_01355) pilD 286114..287001 (-) 888 WP_211673735.1 A24 family peptidase Machinery gene
  HWV01_RS01365 (HWV01_01360) pilC 287121..288371 (-) 1251 WP_211673736.1 type II secretion system F family protein Machinery gene
  HWV01_RS01370 (HWV01_01365) pilB 288457..290160 (-) 1704 WP_211673737.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV01_RS01375 (HWV01_01370) - 290167..290580 (-) 414 WP_211673738.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HWV01_RS01380 (HWV01_01375) nadC 290969..291811 (-) 843 WP_211673739.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33106.42 Da        Isoelectric Point: 5.7575

>NTDB_id=458257 HWV01_RS01360 WP_211673735.1 286114..287001(-) (pilD) [Moritella sp. 5]
MQDLALLFQLYPWLLWLFATLLGLLVGSFLNVVIYRLPIMMEREWKQECTVYFDEECKTAKSEPGATKFNLLLPRSTCPK
CDHQITALENIPVISWLVLRGKCSSCANPISARYPSIELLTGLLSLVVALYIPYGIQLAGALLLTWCLVALTFIDIDKML
LPDQMTLPLLWLGLLLNINYAWVTPSDAIIGAMVGYLSLWTVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSILAIVL
LSSFAGAIIGISQILLKKHTQGNPIPFGPYLAIAGWLYLIWGDQLVDFYLSNFIY

Nucleotide


Download         Length: 888 bp        

>NTDB_id=458257 HWV01_RS01360 WP_211673735.1 286114..287001(-) (pilD) [Moritella sp. 5]
ATGCAAGACTTAGCGCTTCTCTTTCAACTCTATCCTTGGCTATTATGGTTATTCGCTACCTTACTTGGCCTACTCGTTGG
TAGTTTCTTAAATGTGGTCATTTACCGTTTACCTATCATGATGGAGCGTGAATGGAAGCAAGAATGCACCGTTTACTTTG
ATGAAGAATGCAAGACCGCAAAATCAGAACCAGGAGCAACTAAATTCAATTTATTATTACCCCGCTCCACTTGTCCTAAA
TGCGATCATCAAATAACCGCATTAGAAAACATTCCCGTGATCAGCTGGTTAGTATTACGCGGAAAGTGCAGCAGCTGTGC
GAACCCCATTTCAGCACGTTACCCTAGTATTGAGCTACTAACCGGTTTGTTATCGCTCGTCGTGGCCTTGTACATTCCCT
ACGGTATCCAATTAGCGGGGGCATTGTTACTGACTTGGTGTTTAGTTGCGCTGACTTTTATCGATATCGATAAAATGTTA
CTACCCGACCAAATGACATTACCCTTGTTATGGTTAGGCTTACTGCTCAACATCAACTACGCTTGGGTAACCCCTTCAGA
TGCGATTATCGGTGCTATGGTTGGTTACCTATCTCTCTGGACTGTTTATTGGGGATTTAAATTACTGACCGGTAAAGAAG
GCATGGGCTATGGCGACTTCAAACTATTAGCCGCGTTTGGCGCATGGTTCGGCTGGCAGTCGATTTTAGCGATTGTATTA
CTCTCGTCATTTGCTGGCGCTATCATAGGTATTAGTCAAATCCTATTGAAAAAGCATACCCAAGGTAACCCCATTCCATT
TGGTCCTTATCTGGCGATTGCAGGTTGGCTGTATCTTATTTGGGGTGATCAACTCGTTGATTTCTATCTATCCAATTTTA
TTTATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-130)

Type IV leader peptidase family (Peptidase_A24)

(143-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

58.131

97.966

0.569
  pilD Vibrio campbellii strain DS40M4

56.098

97.288

0.546
  pilD Acinetobacter baumannii D1279779

53.265

98.644

0.525
  pilD Acinetobacter nosocomialis M2

53.082

98.983

0.525
  pilD Neisseria gonorrhoeae MS11

47.566

90.508

0.431