Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HWV02_RS01330 Genome accession   NZ_CP056121
Coordinates   282153..283403 (-) Length   416 a.a.
NCBI ID   WP_211689508.1    Uniprot ID   -
Organism   Moritella sp. 28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277153..288403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV02_RS01310 (HWV02_01310) mutT 279896..280288 (+) 393 WP_211679944.1 8-oxo-dGTP diphosphatase MutT -
  HWV02_RS01315 (HWV02_01315) yacG 280311..280502 (-) 192 WP_211675603.1 DNA gyrase inhibitor YacG -
  HWV02_RS01320 (HWV02_01320) coaE 280529..281134 (-) 606 WP_211689507.1 dephospho-CoA kinase -
  HWV02_RS01325 (HWV02_01325) pilD 281146..282033 (-) 888 WP_211678152.1 A24 family peptidase Machinery gene
  HWV02_RS01330 (HWV02_01330) pilC 282153..283403 (-) 1251 WP_211689508.1 type II secretion system F family protein Machinery gene
  HWV02_RS01335 (HWV02_01335) pilB 283489..285192 (-) 1704 WP_211689509.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV02_RS22955 (HWV02_01340) - 285202..285636 (-) 435 WP_211678155.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HWV02_RS01345 (HWV02_01345) nadC 286027..286869 (-) 843 WP_211673739.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HWV02_RS01350 (HWV02_01350) - 286894..287400 (-) 507 WP_211678156.1 TIGR02281 family clan AA aspartic protease -
  HWV02_RS01355 (HWV02_01355) ampD 287545..288117 (+) 573 WP_211689510.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45538.77 Da        Isoelectric Point: 9.9509

>NTDB_id=458234 HWV02_RS01330 WP_211689508.1 282153..283403(-) (pilC) [Moritella sp. 28]
MVAVTKKANRSTSTVKKRYPYNWQGVNRKGKKVSGEMQAESISNLKVELRRQGINVLKASRKSTGLFSKATAKIKPLDIA
LISRQISTMLNAGVPLVQSLEIIARSNDNPSMRALIGEVAAEVATGTPLSDALRKHPLYFDDLYCDLISAGEQSGSLDSI
YDRIATYKEKSEALKSKIKKAMFYPIMVLAVAAVVTLILLLYVIPQFKEIFASFGAELPPFTLFVLSISDFVSQFWYLVI
GILFGLPFAYLKANKRSIKVKHITERTILKIPAIGPIMHKGAMARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKNAV
MDMRNEVIAGLQMHIAMRSTNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLGVVIGG
LVIAMYLPIFEMGSIM

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=458234 HWV02_RS01330 WP_211689508.1 282153..283403(-) (pilC) [Moritella sp. 28]
ATGGTCGCAGTAACTAAAAAAGCCAATCGCAGCACATCGACAGTCAAAAAACGCTATCCCTATAACTGGCAAGGCGTTAA
CCGCAAAGGCAAAAAAGTCAGCGGTGAAATGCAAGCTGAAAGTATCAGTAACTTAAAAGTTGAGTTACGTCGTCAAGGCA
TTAATGTATTAAAAGCCAGTCGTAAATCAACAGGTTTATTTTCCAAAGCAACGGCCAAAATAAAACCACTGGATATTGCA
CTTATTTCACGACAAATATCAACCATGCTTAATGCGGGCGTACCGCTGGTGCAGAGCTTAGAGATTATAGCCCGCAGTAA
TGATAACCCTTCCATGCGCGCGCTAATTGGTGAAGTTGCAGCGGAAGTAGCGACGGGCACTCCGCTTTCTGATGCATTAC
GTAAACACCCTCTTTATTTTGATGACTTATATTGTGATCTTATTAGTGCCGGTGAACAATCCGGTTCATTAGACAGTATT
TATGATCGTATCGCGACTTATAAAGAAAAATCTGAAGCTCTCAAATCTAAGATAAAAAAAGCTATGTTCTACCCGATTAT
GGTACTCGCAGTTGCAGCTGTCGTGACACTTATTTTATTACTCTATGTGATACCCCAATTCAAAGAAATTTTTGCCAGTT
TTGGTGCTGAACTTCCCCCTTTCACCCTGTTTGTCTTATCTATTTCTGACTTTGTCAGTCAATTTTGGTATTTGGTGATC
GGTATATTATTCGGATTACCTTTTGCTTACCTTAAAGCTAATAAGCGTTCGATAAAAGTTAAACACATCACTGAGCGCAC
GATTCTCAAGATACCAGCGATTGGGCCGATCATGCACAAAGGGGCGATGGCGCGTTTTGCCAGAACTCTATCAACAACAT
TTGCCGCTGGTATTCCGCTTGTTGATTCATTAACGTCAGCAGCCGGCGCATCAGGTAATATTGTCTATAAAAATGCAGTC
ATGGATATGCGTAACGAAGTTATCGCCGGATTACAAATGCATATCGCCATGCGCTCAACCAATTTATTTCCTGATATGGT
CACGCAAATGGTGATGATCGGTGAAGAGTCAGGCTCACTTGATGATATGTTGGCGAAAGTCGCCCATATTTATGAACAAC
AAGTCGATGATGCGGTCGATGGCTTAACCAGTTTAATCGAACCCATGATCATGGTTGTATTAGGCGTCGTCATTGGCGGC
CTCGTGATTGCCATGTACTTACCTATCTTTGAAATGGGCAGTATTATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-205)

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.75

96.154

0.526
  pilC Acinetobacter baylyi ADP1

51.25

96.154

0.493
  pilC Acinetobacter baumannii D1279779

50.75

96.154

0.488
  pilC Legionella pneumophila strain ERS1305867

50.508

94.712

0.478
  pilG Neisseria gonorrhoeae MS11

44.913

96.875

0.435
  pilG Neisseria meningitidis 44/76-A

44.665

96.875

0.433
  pilC Vibrio cholerae strain A1552

45.226

95.673

0.433
  pilC Vibrio campbellii strain DS40M4

44.081

95.433

0.421