Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HWV02_RS01325 Genome accession   NZ_CP056121
Coordinates   281146..282033 (-) Length   295 a.a.
NCBI ID   WP_211678152.1    Uniprot ID   -
Organism   Moritella sp. 28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276146..287033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV02_RS01305 (HWV02_01305) secA 277059..279776 (+) 2718 WP_211678150.1 preprotein translocase subunit SecA -
  HWV02_RS01310 (HWV02_01310) mutT 279896..280288 (+) 393 WP_211679944.1 8-oxo-dGTP diphosphatase MutT -
  HWV02_RS01315 (HWV02_01315) yacG 280311..280502 (-) 192 WP_211675603.1 DNA gyrase inhibitor YacG -
  HWV02_RS01320 (HWV02_01320) coaE 280529..281134 (-) 606 WP_211689507.1 dephospho-CoA kinase -
  HWV02_RS01325 (HWV02_01325) pilD 281146..282033 (-) 888 WP_211678152.1 A24 family peptidase Machinery gene
  HWV02_RS01330 (HWV02_01330) pilC 282153..283403 (-) 1251 WP_211689508.1 type II secretion system F family protein Machinery gene
  HWV02_RS01335 (HWV02_01335) pilB 283489..285192 (-) 1704 WP_211689509.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV02_RS22955 (HWV02_01340) - 285202..285636 (-) 435 WP_211678155.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HWV02_RS01345 (HWV02_01345) nadC 286027..286869 (-) 843 WP_211673739.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33136.39 Da        Isoelectric Point: 5.2479

>NTDB_id=458233 HWV02_RS01325 WP_211678152.1 281146..282033(-) (pilD) [Moritella sp. 28]
MQDLALLFQLYPWLLWLFATLLGLLVGSFLNVVIYRLPIMMEREWKQECTVYFDEECKTAKSEPEATKFNLLLPRSACPK
CDHQITALENIPVISWLVLRGKCSSCANPISARYPSIELLTGLLSFVVALYIPYGIQLAGALLLTWCLVALTFIDIDKML
LPDQMTLPLLWLGLLLNVNYAWVSPSDAIIGAIVGYLSLWTVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSILAIVL
LSSFAGAIIGISQILLKKHTQGNPIPFGPYLAIAGWLYLIWGDQLVDFYLSNFIY

Nucleotide


Download         Length: 888 bp        

>NTDB_id=458233 HWV02_RS01325 WP_211678152.1 281146..282033(-) (pilD) [Moritella sp. 28]
ATGCAAGACTTAGCGCTTCTCTTTCAACTCTATCCTTGGCTATTATGGTTATTCGCTACCTTACTTGGCCTACTCGTTGG
TAGTTTCTTAAATGTGGTCATTTACCGTTTACCTATCATGATGGAGCGTGAATGGAAGCAAGAGTGCACAGTTTACTTTG
ATGAAGAATGCAAGACCGCAAAGTCAGAACCAGAAGCAACTAAATTCAATTTATTATTACCCCGCTCCGCTTGTCCTAAA
TGCGATCATCAAATAACCGCATTAGAAAACATTCCCGTGATCAGCTGGTTAGTATTACGCGGAAAGTGCAGTAGTTGTGC
AAACCCAATTTCAGCACGTTACCCTAGTATTGAGCTACTAACCGGTTTGTTATCGTTCGTCGTGGCCTTGTACATTCCTT
ACGGTATCCAATTAGCGGGGGCATTATTACTGACTTGGTGTTTAGTTGCGCTGACTTTTATCGATATCGATAAAATGTTA
CTACCCGACCAAATGACATTACCCTTGTTATGGTTAGGCTTACTGCTCAACGTCAACTACGCTTGGGTCTCCCCTTCAGA
TGCAATTATCGGTGCTATCGTTGGTTATCTATCTCTCTGGACTGTGTATTGGGGTTTTAAGTTACTGACCGGTAAAGAAG
GTATGGGTTATGGTGACTTCAAACTATTAGCCGCGTTTGGCGCATGGTTCGGCTGGCAGTCGATTTTAGCGATTGTTTTA
CTCTCGTCATTTGCTGGCGCTATCATAGGTATTAGTCAAATCCTATTGAAAAAGCATACCCAAGGTAACCCCATTCCATT
TGGTCCTTATCTGGCGATTGCAGGTTGGCTGTATCTTATTTGGGGTGATCAACTCGTTGATTTCTATCTATCCAATTTTA
TTTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(143-251)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

57.439

97.966

0.563
  pilD Vibrio campbellii strain DS40M4

55.709

97.966

0.546
  pilD Acinetobacter baumannii D1279779

53.082

98.983

0.525
  pilD Acinetobacter nosocomialis M2

53.082

98.983

0.525
  pilD Neisseria gonorrhoeae MS11

47.761

90.847

0.434