Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HWV03_RS01330 Genome accession   NZ_CP056120
Coordinates   284382..285632 (-) Length   416 a.a.
NCBI ID   WP_211678153.1    Uniprot ID   -
Organism   Moritella sp. 36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279382..290632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV03_RS01310 (HWV03_01310) mutT 282125..282517 (+) 393 WP_211679944.1 8-oxo-dGTP diphosphatase MutT -
  HWV03_RS01315 (HWV03_01315) yacG 282540..282731 (-) 192 WP_211675603.1 DNA gyrase inhibitor YacG -
  HWV03_RS01320 (HWV03_01320) coaE 282758..283363 (-) 606 WP_211678151.1 dephospho-CoA kinase -
  HWV03_RS01325 (HWV03_01325) pilD 283375..284262 (-) 888 WP_211678152.1 A24 family peptidase Machinery gene
  HWV03_RS01330 (HWV03_01330) pilC 284382..285632 (-) 1251 WP_211678153.1 type II secretion system F family protein Machinery gene
  HWV03_RS01335 (HWV03_01335) pilB 285718..287421 (-) 1704 WP_211678154.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWV03_RS22680 (HWV03_01340) - 287431..287865 (-) 435 WP_211678155.1 pilin -
  HWV03_RS01345 (HWV03_01345) nadC 288255..289097 (-) 843 WP_211673739.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HWV03_RS01350 (HWV03_01350) - 289122..289628 (-) 507 WP_211678156.1 retropepsin-like aspartic protease -
  HWV03_RS01355 (HWV03_01355) ampD 289773..290345 (+) 573 WP_211678157.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45433.66 Da        Isoelectric Point: 9.9509

>NTDB_id=458210 HWV03_RS01330 WP_211678153.1 284382..285632(-) (pilC) [Moritella sp. 36]
MVAVTKKANRSTSTVKKRYPYNWQGVNRKGKKVSGEMQAESISNLKVELRRQGINVLKASRKSTGLFSKATAKIKPLDIA
LISRQISTMLNAGVPLVQSLEIIARSNDSPAMRALIGEVAAEVATGTPLSDALRKHPLYFDDLYCDLISAGEQSGSLDSI
YDRIATYKEKAEALKSKIKKALFYPIMVVAVATVVTLVLLLYVIPQFKEIFAGFGAELPPFTLFVLSISDFVSQFWYLVI
GILFGLPFAYLKANKRSIKVKHITERTILKIPAIGPIMHKGAMARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKNAV
MDMRNEVIAGLQMHIAMRSTNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLGVVIGG
LVIAMYLPIFEMGSIM

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=458210 HWV03_RS01330 WP_211678153.1 284382..285632(-) (pilC) [Moritella sp. 36]
ATGGTCGCAGTAACTAAAAAAGCCAATCGCAGCACATCGACAGTCAAAAAACGCTATCCCTATAACTGGCAAGGCGTTAA
CCGCAAAGGCAAAAAAGTCAGCGGTGAAATGCAAGCTGAAAGTATCAGTAACTTAAAAGTTGAGTTACGTCGTCAAGGCA
TTAATGTATTAAAAGCCAGTCGTAAATCAACAGGTTTATTTTCCAAAGCAACGGCCAAAATAAAACCACTGGATATTGCA
CTTATTTCACGACAAATATCAACCATGCTTAATGCGGGCGTACCGCTGGTGCAGAGCTTAGAGATCATAGCCCGCAGTAA
TGATAGCCCAGCCATGCGAGCACTAATTGGTGAAGTCGCAGCAGAAGTCGCGACAGGCACACCGCTTTCAGATGCATTAC
GTAAACATCCACTTTATTTTGATGACTTATATTGCGATTTAATTAGCGCAGGTGAACAATCCGGTTCATTAGACAGTATT
TATGATCGTATCGCGACTTATAAAGAAAAAGCAGAAGCACTCAAATCTAAGATTAAAAAAGCCTTGTTCTACCCGATTAT
GGTAGTCGCAGTTGCAACTGTCGTAACCTTGGTTTTATTACTCTATGTTATACCTCAATTCAAAGAAATTTTCGCAGGTT
TTGGGGCTGAACTTCCCCCTTTCACCCTGTTTGTATTATCTATTTCTGACTTTGTCAGTCAATTTTGGTATTTGGTGATC
GGTATATTATTCGGATTACCTTTTGCTTACCTTAAAGCTAATAAGCGTTCGATAAAAGTTAAACACATCACTGAGCGCAC
GATTCTCAAGATACCAGCGATTGGGCCGATCATGCACAAAGGGGCGATGGCGCGTTTTGCCAGAACTCTATCAACAACAT
TTGCCGCTGGTATTCCGCTTGTTGATTCATTAACGTCAGCAGCCGGCGCATCAGGTAATATTGTCTATAAAAATGCAGTC
ATGGATATGCGTAACGAAGTTATCGCCGGATTACAAATGCATATCGCCATGCGCTCAACCAATTTATTTCCTGATATGGT
CACGCAAATGGTGATGATCGGTGAAGAGTCAGGCTCACTTGATGATATGTTGGCGAAAGTCGCCCATATTTATGAACAAC
AAGTCGATGATGCGGTCGATGGCTTAACCAGTTTAATCGAACCCATGATCATGGTGGTATTAGGAGTCGTCATCGGCGGC
CTCGTTATTGCCATGTATTTACCTATCTTTGAAATGGGCAGTATTATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-205)

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

96.154

0.522
  pilC Acinetobacter baylyi ADP1

50.25

96.154

0.483
  pilC Legionella pneumophila strain ERS1305867

50.761

94.712

0.481
  pilC Acinetobacter baumannii D1279779

49.875

95.913

0.478
  pilC Vibrio cholerae strain A1552

45.729

95.673

0.438
  pilG Neisseria gonorrhoeae MS11

45.025

96.635

0.435
  pilG Neisseria meningitidis 44/76-A

44.776

96.635

0.433
  pilC Vibrio campbellii strain DS40M4

44.584

95.433

0.425